RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 TMX2Q9Y320 296 aa18.52■□□□□ 0.56
LIMS1-210ENST00000449684 IGHDP01880 384 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 INHAP05111 366 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 COG2Q14746 738 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 Q3C1V9 767 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 SAMD1Q6SPF0 538 aaPredicted RBP18.51■□□□□ 0.55
LIMS1-210ENST00000449684 CHD1LQ86WJ1 897 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 CLEC10AQ8IUN9 316 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 SPICE1Q8N0Z3 855 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 SOCS4Q8WXH5 440 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 RILPL2Q969X0 211 aa18.51■□□□□ 0.55
LIMS1-210ENST00000449684 EPB41L4AQ9HCS5 686 aaPredicted RBP18.51■□□□□ 0.55
LIMS1-210ENST00000449684 EEF2P13639 858 aaKnown RBP18.5■□□□□ 0.55
LIMS1-210ENST00000449684 CYP2B6P20813 491 aa18.5■□□□□ 0.55
LIMS1-210ENST00000449684 PDE4BQ07343 736 aa18.5■□□□□ 0.55
LIMS1-210ENST00000449684 PLEKHH3Q7Z736 793 aa18.5■□□□□ 0.55
LIMS1-210ENST00000449684 VCPKMTQ9H867 229 aa18.5■□□□□ 0.55
LIMS1-210ENST00000449684 GOPCQ9HD26 462 aa18.5■□□□□ 0.55
LIMS1-210ENST00000449684 PDE4DIPQ5VU43 2346 aa18.5■□□□□ 0.55
LIMS1-210ENST00000449684 RBBP6Q7Z6E9 1792 aaKnown RBP18.5■□□□□ 0.55
LIMS1-210ENST00000449684 TNRC18O15417 2968 aaPredicted RBP18.49■□□□□ 0.55
LIMS1-210ENST00000449684 DOCK3Q8IZD9 2030 aa18.49■□□□□ 0.55
LIMS1-210ENST00000449684 FLOT1O75955 427 aa18.49■□□□□ 0.55
LIMS1-210ENST00000449684 GJB1P08034 283 aa18.49■□□□□ 0.55
LIMS1-210ENST00000449684 GPR142Q7Z601 462 aa18.49■□□□□ 0.55
LIMS1-210ENST00000449684 UNC93B1Q9H1C4 597 aa18.49■□□□□ 0.55
LIMS1-210ENST00000449684 PORCNQ9H237 461 aa18.49■□□□□ 0.55
LIMS1-210ENST00000449684 GJD2Q9UKL4 321 aa18.49■□□□□ 0.55
LIMS1-210ENST00000449684 IVNS1ABPQ9Y6Y0 642 aa18.49■□□□□ 0.55
LIMS1-210ENST00000449684 SPDYE16A6NNV3 312 aaPredicted RBP18.48■□□□□ 0.55
LIMS1-210ENST00000449684 WDR46O15213 610 aaKnown RBP18.48■□□□□ 0.55
LIMS1-210ENST00000449684 HMGCRP04035 888 aa18.48■□□□□ 0.55
LIMS1-210ENST00000449684 RASA1P20936 1047 aa18.48■□□□□ 0.55
LIMS1-210ENST00000449684 NUCB1Q02818 461 aa18.48■□□□□ 0.55
LIMS1-210ENST00000449684 LBX2Q6XYB7 198 aa18.48■□□□□ 0.55
LIMS1-210ENST00000449684 CCDC129Q6ZRS4 1044 aa18.48■□□□□ 0.55
LIMS1-210ENST00000449684 SIAH1Q8IUQ4 282 aa18.48■□□□□ 0.55
LIMS1-210ENST00000449684 HELLSQ9NRZ9 838 aa18.48■□□□□ 0.55
LIMS1-210ENST00000449684 ROBO3Q96MS0 1386 aa18.47■□□□□ 0.55
LIMS1-210ENST00000449684 PRDM1O75626 825 aa18.47■□□□□ 0.55
LIMS1-210ENST00000449684 RGS2P41220 211 aa18.47■□□□□ 0.55
LIMS1-210ENST00000449684 GJA8P48165 433 aa18.47■□□□□ 0.55
LIMS1-210ENST00000449684 IRX6P78412 446 aaPredicted RBP18.47■□□□□ 0.55
LIMS1-210ENST00000449684 PLS1Q14651 629 aa18.47■□□□□ 0.55
LIMS1-210ENST00000449684 CNMDO75829 334 aa18.46■□□□□ 0.55
LIMS1-210ENST00000449684 TFRCP02786 760 aaKnown RBP18.46■□□□□ 0.55
LIMS1-210ENST00000449684 TSPY3P0CV98 308 aa18.46■□□□□ 0.55
LIMS1-210ENST00000449684 TSPY8P0CW00 308 aa18.46■□□□□ 0.55
LIMS1-210ENST00000449684 PPARAQ07869 468 aa18.46■□□□□ 0.55
LIMS1-210ENST00000449684 MCMDC2Q4G0Z9 681 aa18.46■□□□□ 0.55
LIMS1-210ENST00000449684 KIAA1755Q5JYT7 1200 aa18.46■□□□□ 0.55
LIMS1-210ENST00000449684 TRMT44Q8IYL2 757 aaKnown RBP18.46■□□□□ 0.55
LIMS1-210ENST00000449684 MB21D1Q8N884 522 aa18.46■□□□□ 0.55
LIMS1-210ENST00000449684 U2AF1L4Q8WU68 220 aaKnown RBP18.46■□□□□ 0.55
LIMS1-210ENST00000449684 BTBD7Q9P203 1132 aa18.46■□□□□ 0.55
LIMS1-210ENST00000449684 XRCC5P13010 732 aaKnown RBP18.45■□□□□ 0.54
LIMS1-210ENST00000449684 ZKSCAN1P17029 563 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-210ENST00000449684 DSG3P32926 999 aa18.45■□□□□ 0.54
LIMS1-210ENST00000449684 PRPF38BQ5VTL8 546 aaKnown RBP18.45■□□□□ 0.54
LIMS1-210ENST00000449684 POTEEQ6S8J3 1075 aa18.45■□□□□ 0.54
LIMS1-210ENST00000449684 TICAM2Q86XR7 235 aa18.45■□□□□ 0.54
LIMS1-210ENST00000449684 DEFB118Q96PH6 123 aa18.45■□□□□ 0.54
LIMS1-210ENST00000449684 HMX1Q9NP08 348 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-210ENST00000449684 NYAP2Q9P242 653 aa18.45■□□□□ 0.54
LIMS1-210ENST00000449684 CLIP2Q9UDT6 1046 aa18.45■□□□□ 0.54
LIMS1-210ENST00000449684 SGPL1O95470 568 aa18.44■□□□□ 0.54
LIMS1-210ENST00000449684 PLEKHM2Q8IWE5 1019 aa18.44■□□□□ 0.54
LIMS1-210ENST00000449684 FAM227BQ96M60 508 aa18.44■□□□□ 0.54
LIMS1-210ENST00000449684 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.44■□□□□ 0.54
LIMS1-210ENST00000449684 SLC15A5A6NIM6 579 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 CAPN2P17655 700 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 PTPREP23469 700 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 MFAP1P55081 439 aaKnown RBP18.43■□□□□ 0.54
LIMS1-210ENST00000449684 MAP2K5Q13163 448 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 MORN1Q5T089 497 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 FAM83BQ5T0W9 1011 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 TRIB2Q92519 343 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 ATG4CQ96DT6 458 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 APBA2Q99767 749 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.43■□□□□ 0.54
LIMS1-210ENST00000449684 SPATC1LQ9H0A9 340 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 ISY1Q9ULR0 285 aaKnown RBP18.43■□□□□ 0.54
LIMS1-210ENST00000449684 CTDP1Q9Y5B0 961 aaPredicted RBP18.43■□□□□ 0.54
LIMS1-210ENST00000449684 RPTORQ8N122 1335 aa18.43■□□□□ 0.54
LIMS1-210ENST00000449684 TSPY2A6NKD2 308 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 F5H6K3 240 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 TTLL1O95922 423 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 TFAP4Q01664 338 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 CTDSPL2Q05D32 466 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 KLRC3Q07444 240 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 NMIQ13287 307 aaPredicted RBP18.42■□□□□ 0.54
LIMS1-210ENST00000449684 FAM47AQ5JRC9 791 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 PPP4R3BQ5MIZ7 849 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 VPS53Q5VIR6 699 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 DPP9Q86TI2 863 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 NCAPG2Q86XI2 1143 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 SHISA4Q96DD7 197 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 CEP95Q96GE4 821 aa18.42■□□□□ 0.54
LIMS1-210ENST00000449684 MOV10L1Q9BXT6 1211 aaKnown RBP18.42■□□□□ 0.54
LIMS1-210ENST00000449684 OSBPL3Q9H4L5 887 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms