RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 MFSD14CQ5VZR4 134 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 GPR142Q7Z601 462 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 SIRT2Q8IXJ6 389 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 USP6NLQ92738 828 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 PAWRQ96IZ0 340 aaKnown RBP8.51□□□□□ -1.05
VPS41-208ENST00000448833 APBA2Q99767 749 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 BOLA2Q9H3K6 86 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 ZNF287Q9HBT7 754 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 TXNRD2Q9NNW7 524 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 OGDHLQ9ULD0 1010 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 DNAH12Q6ZR08 3092 aa8.51□□□□□ -1.05
VPS41-208ENST00000448833 HOXC6P09630 235 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 PTPREP23469 700 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 FXR1P51114 621 aaKnown RBP eCLIP8.5□□□□□ -1.05
VPS41-208ENST00000448833 ATP2B2Q01814 1243 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 SEPT2Q15019 361 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 C12orf60Q5U649 245 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 WDR78Q5VTH9 848 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 GIMAP6Q6P9H5 292 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 SHCBP1Q8NEM2 672 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 TRIB2Q92519 343 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 TANGO6Q9C0B7 1094 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 BCL11AQ9H165 835 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 MROH8Q9H579 483 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 C11orf49Q9H6J7 331 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 RPAP3Q9H6T3 665 aaPredicted RBP8.5□□□□□ -1.05
VPS41-208ENST00000448833 KANSL2Q9H9L4 492 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 ECHDC1Q9NTX5 307 aa8.5□□□□□ -1.05
VPS41-208ENST00000448833 MBD4O95243 580 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 SLC25A27O95847 323 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 GNAT2P19087 354 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 COPB2P35606 906 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 CACNB2Q08289 660 aaPredicted RBP8.49□□□□□ -1.05
VPS41-208ENST00000448833 DPP9Q86TI2 863 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 ABRAQ8N0Z2 381 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 LCORLQ8N3X6 602 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 ACER1Q8TDN7 264 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 SDR42E1Q8WUS8 393 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 PORCNQ9H237 461 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 ARMT1Q9H993 441 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 GOPCQ9HD26 462 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 ARPP21Q9UBL0 812 aaPredicted RBP8.49□□□□□ -1.05
VPS41-208ENST00000448833 ZBTB47Q9UFB7 747 aaPredicted RBP8.49□□□□□ -1.05
VPS41-208ENST00000448833 TMX2Q9Y320 296 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 SLC4A4Q9Y6R1 1079 aa8.49□□□□□ -1.05
VPS41-208ENST00000448833 ALPK3Q96L96 1907 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 PARP14Q460N5 1801 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 FRMPD3Q5JV73 1810 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 ZNF236Q9UL36 1845 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 SPDYE16A6NNV3 312 aaPredicted RBP8.48□□□□□ -1.05
VPS41-208ENST00000448833 USP17L12C9JPN9 530 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 USP17L21D6R901 530 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 ERC2O15083 957 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 WDR46O15213 610 aaKnown RBP8.48□□□□□ -1.05
VPS41-208ENST00000448833 GUCY1A2P33402 732 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 BMP8BP34820 402 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 CDK8P49336 464 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 ICA1Q05084 483 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 GRB14Q14449 540 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 SHROOM1Q2M3G4 852 aaPredicted RBP8.48□□□□□ -1.05
VPS41-208ENST00000448833 SBK1Q52WX2 424 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 C16orf86Q6ZW13 317 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 ARRDC4Q8NCT1 418 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 DCTPP1Q9H773 170 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 VCPKMTQ9H867 229 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 MKNK2Q9HBH9 465 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 RBM27Q9P2N5 1060 aaKnown RBP8.48□□□□□ -1.05
VPS41-208ENST00000448833 RLFQ13129 1914 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 MYH4Q9Y623 1939 aa8.48□□□□□ -1.05
VPS41-208ENST00000448833 COL11A1P12107 1806 aaPredicted RBP8.47□□□□□ -1.05
VPS41-208ENST00000448833 PLXNA1Q9UIW2 1896 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 A0A1W2PRG0 241 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 PITPNM1O00562 1244 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 CNMDO75829 334 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 FLOT1O75955 427 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 SLC3A2P08195 630 aaKnown RBP8.47□□□□□ -1.05
VPS41-208ENST00000448833 FCER1AP12319 257 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 CNGA1P29973 690 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 PPP4R3BQ5MIZ7 849 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 OLFML2BQ68BL8 750 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 KBTBD3Q8NAB2 608 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 NACAP1Q9BZK3 213 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 SPATC1LQ9H0A9 340 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 BTBD7Q9P203 1132 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 SYNPO2Q9UMS6 1093 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 TTC41PQ6P2S7 1318 aa8.47□□□□□ -1.05
VPS41-208ENST00000448833 A0A0G2JMZ2 1700 aa8.46□□□□□ -1.05
VPS41-208ENST00000448833 TRIOBPQ9H2D6 2365 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 RNF113AO15541 343 aaKnown RBP8.46□□□□□ -1.06
VPS41-208ENST00000448833 PRKAB2O43741 272 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 TRIM32Q13049 653 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 PLS1Q14651 629 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 GPR153Q6NV75 609 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 CTR9Q6PD62 1173 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 TICAM2Q86XR7 235 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 C7orf61Q8IZ16 206 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 ZNF444Q8N0Y2 327 aaPredicted RBP8.46□□□□□ -1.06
VPS41-208ENST00000448833 SPDYE1Q8NFV5 336 aaPredicted RBP8.46□□□□□ -1.06
VPS41-208ENST00000448833 APPBP2Q92624 585 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 DYNLL2Q96FJ2 89 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms