RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 A0A1W2PRG0 241 aa19.4■□□□□ 0.7
SF3A1-204ENST00000447376 ZNF213O14771 459 aa19.4■□□□□ 0.7
SF3A1-204ENST00000447376 BMP2KLQ5H9B9 411 aa19.4■□□□□ 0.7
SF3A1-204ENST00000447376 CATSPERGQ6ZRH7 1159 aa19.4■□□□□ 0.7
SF3A1-204ENST00000447376 NBPF11Q86T75 865 aa19.4■□□□□ 0.7
SF3A1-204ENST00000447376 CLEC10AQ8IUN9 316 aa19.4■□□□□ 0.7
SF3A1-204ENST00000447376 GPRC5AQ8NFJ5 357 aa19.4■□□□□ 0.7
SF3A1-204ENST00000447376 ARHGAP39Q9C0H5 1083 aa19.4■□□□□ 0.7
SF3A1-204ENST00000447376 RNF41Q9H4P4 317 aaPredicted RBP19.4■□□□□ 0.7
SF3A1-204ENST00000447376 WDR46O15213 610 aaKnown RBP19.39■□□□□ 0.69
SF3A1-204ENST00000447376 RANBP6O60518 1105 aaKnown RBP19.39■□□□□ 0.69
SF3A1-204ENST00000447376 TTLL1O95922 423 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 PCP11498 1178 aaKnown RBP19.39■□□□□ 0.69
SF3A1-204ENST00000447376 CCNA1P78396 465 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 TFAP4Q01664 338 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 NEDD1Q8NHV4 660 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 RAET1EQ8TD07 263 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 PAGR1Q9BTK6 254 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 DSCC1Q9BVC3 393 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 HOXC10Q9NYD6 342 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 CLIP2Q9UDT6 1046 aa19.39■□□□□ 0.69
SF3A1-204ENST00000447376 FOXP2O15409 715 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 COG2Q14746 738 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 IMMTQ16891 758 aaKnown RBP19.38■□□□□ 0.69
SF3A1-204ENST00000447376 SLC9C1Q4G0N8 1177 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 MFSD6Q6ZSS7 791 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 MYPNQ86TC9 1320 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 SPICE1Q8N0Z3 855 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 TRIM47Q96LD4 638 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 MORF4L1Q9UBU8 362 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 SRRDQ9UH36 339 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 SYNPO2Q9UMS6 1093 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 RABGAP1Q9Y3P9 1069 aa19.38■□□□□ 0.69
SF3A1-204ENST00000447376 PLIN4Q96Q06 1357 aa19.37■□□□□ 0.69
SF3A1-204ENST00000447376 ORC4O43929 436 aa19.37■□□□□ 0.69
SF3A1-204ENST00000447376 FLOT1O75955 427 aa19.37■□□□□ 0.69
SF3A1-204ENST00000447376 CHMLP26374 656 aa19.37■□□□□ 0.69
SF3A1-204ENST00000447376 NT5C2P49902 561 aa19.37■□□□□ 0.69
SF3A1-204ENST00000447376 HAND2P61296 217 aa19.37■□□□□ 0.69
SF3A1-204ENST00000447376 FAM47AQ5JRC9 791 aa19.37■□□□□ 0.69
SF3A1-204ENST00000447376 RRP12Q5JTH9 1297 aaKnown RBP19.37■□□□□ 0.69
SF3A1-204ENST00000447376 MTMR4Q9NYA4 1195 aa19.37■□□□□ 0.69
SF3A1-204ENST00000447376 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.37■□□□□ 0.69
SF3A1-204ENST00000447376 MAPK4P31152 587 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 ERVK-9P63128 1117 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 ERVK-24P63145 666 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 AKNAD1Q5T1N1 836 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 SAMD1Q6SPF0 538 aaPredicted RBP19.36■□□□□ 0.69
SF3A1-204ENST00000447376 CASC1Q6TDU7 716 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 SKAP1Q86WV1 359 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 SIAH1Q8IUQ4 282 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 CEP95Q96GE4 821 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 STX8Q9UNK0 236 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 PTCH2Q9Y6C5 1203 aa19.36■□□□□ 0.69
SF3A1-204ENST00000447376 LBX2Q6XYB7 198 aa19.35■□□□□ 0.69
SF3A1-204ENST00000447376 KIAA1211Q6ZU35 1233 aa19.35■□□□□ 0.69
SF3A1-204ENST00000447376 MB21D1Q8N884 522 aa19.35■□□□□ 0.69
SF3A1-204ENST00000447376 STAG1Q8WVM7 1258 aa19.35■□□□□ 0.69
SF3A1-204ENST00000447376 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.35■□□□□ 0.69
SF3A1-204ENST00000447376 ISY1Q9ULR0 285 aaKnown RBP19.35■□□□□ 0.69
SF3A1-204ENST00000447376 GREB1LQ9C091 1923 aaPredicted RBP19.35■□□□□ 0.69
SF3A1-204ENST00000447376 IGKV6D-41A0A0C4DH26 115 aa19.34■□□□□ 0.69
SF3A1-204ENST00000447376 SPDYE16A6NNV3 312 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-204ENST00000447376 ESR2Q92731 530 aa19.34■□□□□ 0.69
SF3A1-204ENST00000447376 RBPJLQ9UBG7 517 aa19.34■□□□□ 0.69
SF3A1-204ENST00000447376 BIN2Q9UBW5 565 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-204ENST00000447376 CTDP1Q9Y5B0 961 aaPredicted RBP19.34■□□□□ 0.69
SF3A1-204ENST00000447376 MGAMO43451 1857 aa19.33■□□□□ 0.69
SF3A1-204ENST00000447376 F5H6K3 240 aa19.33■□□□□ 0.68
SF3A1-204ENST00000447376 PRKCZQ05513 592 aa19.33■□□□□ 0.68
SF3A1-204ENST00000447376 KLRC3Q07444 240 aa19.33■□□□□ 0.68
SF3A1-204ENST00000447376 WDR78Q5VTH9 848 aa19.33■□□□□ 0.68
SF3A1-204ENST00000447376 MKL1Q969V6 931 aa19.33■□□□□ 0.68
SF3A1-204ENST00000447376 IVNS1ABPQ9Y6Y0 642 aa19.33■□□□□ 0.68
SF3A1-204ENST00000447376 FGRP09769 529 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 CTGFP29279 349 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 DSG3P32926 999 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 CCDC178Q5BJE1 867 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 FAM83BQ5T0W9 1011 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 LRRC47Q8N1G4 583 aaKnown RBP19.32■□□□□ 0.68
SF3A1-204ENST00000447376 SLAIN1Q8ND83 568 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 GMCL1P1Q8NEA9 526 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 CNNM2Q9H8M5 875 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 TXNRD2Q9NNW7 524 aa19.32■□□□□ 0.68
SF3A1-204ENST00000447376 MYH4Q9Y623 1939 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 ZSWIM8A7E2V4 1837 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 SGSM2O43147 1006 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 GRK4P32298 578 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 FLT3LGP49771 235 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 UBXN2AP68543 259 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 CAP1Q01518 475 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 TRDNQ13061 729 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 PLS1Q14651 629 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 IQCA1Q86XH1 822 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 SOCS4Q8WXH5 440 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 TMEM106CQ9BVX2 250 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 KRT23Q9C075 422 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 INCENPQ9NQS7 918 aa19.31■□□□□ 0.68
SF3A1-204ENST00000447376 U3KPZ7 1027 aaPredicted RBP19.31■□□□□ 0.68
SF3A1-204ENST00000447376 CDC45O75419 566 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms