RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 MAP3K14Q99558 947 aa24.38■■□□□ 1.49
PTPRF-207ENST00000436724 MTMR4Q9NYA4 1195 aa24.38■■□□□ 1.49
PTPRF-207ENST00000436724 DACT1Q9NYF0 836 aa24.38■■□□□ 1.49
PTPRF-207ENST00000436724 STK38Q15208 465 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 ANO1Q5XXA6 986 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 PPP1R9BQ96SB3 815 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 EHD4Q9H223 541 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 DHX36Q9H2U1 1008 aaKnown RBP24.37■■□□□ 1.49
PTPRF-207ENST00000436724 CPVLQ9H3G5 476 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 CD2APQ9Y5K6 639 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 PLIN4Q96Q06 1357 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 CLRN2A0PK11 232 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 SPDYE2BA6NHP3 402 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 NR1I2O75469 434 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 SPDYE6P0CI01 402 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 TOP1P11387 765 aaKnown RBP24.37■■□□□ 1.49
PTPRF-207ENST00000436724 NOVP48745 357 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 SHROOM1Q2M3G4 852 aaPredicted RBP24.37■■□□□ 1.49
PTPRF-207ENST00000436724 PCDHA7Q9UN72 937 aa24.37■■□□□ 1.49
PTPRF-207ENST00000436724 MPHOSPH10O00566 681 aaKnown RBP24.36■■□□□ 1.49
PTPRF-207ENST00000436724 CYTH3O43739 400 aa24.36■■□□□ 1.49
PTPRF-207ENST00000436724 SF3A1Q15459 793 aaKnown RBP24.36■■□□□ 1.49
PTPRF-207ENST00000436724 USP17L2Q6R6M4 530 aa24.36■■□□□ 1.49
PTPRF-207ENST00000436724 OGFOD1Q8N543 542 aa24.36■■□□□ 1.49
PTPRF-207ENST00000436724 PHF20Q9BVI0 1012 aa24.36■■□□□ 1.49
PTPRF-207ENST00000436724 PI4KBQ9UBF8 816 aa24.36■■□□□ 1.49
PTPRF-207ENST00000436724 IGKV6D-41A0A0C4DH26 115 aa24.36■■□□□ 1.49
PTPRF-207ENST00000436724 PALM3A6NDB9 673 aaPredicted RBP24.36■■□□□ 1.49
PTPRF-207ENST00000436724 LRRC47Q8N1G4 583 aaKnown RBP24.36■■□□□ 1.49
PTPRF-207ENST00000436724 NLGN2Q8NFZ4 835 aa24.36■■□□□ 1.49
PTPRF-207ENST00000436724 SCG2P13521 617 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 XBP1P17861 261 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 CAMK4Q16566 473 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 RBSNQ9H1K0 784 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 FOXP1Q9H334 677 aaPredicted RBP24.35■■□□□ 1.49
PTPRF-207ENST00000436724 ESPNB1AK53 854 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 TCP10L2B9ZVM9 353 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 SPTLC2O15270 562 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 YEATS4O95619 227 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 CCDC173Q0VFZ6 552 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 DLGAP5Q15398 846 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 PFKFB3Q16875 520 aaPredicted RBP24.35■■□□□ 1.49
PTPRF-207ENST00000436724 CCAR1Q8IX12 1150 aaKnown RBP24.35■■□□□ 1.49
PTPRF-207ENST00000436724 GOLPH3LQ9H4A5 285 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 CLIP2Q9UDT6 1046 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 HDAC9Q9UKV0 1011 aa24.35■■□□□ 1.49
PTPRF-207ENST00000436724 NPM3O75607 178 aaKnown RBP24.34■■□□□ 1.49
PTPRF-207ENST00000436724 JDP2Q8WYK2 163 aa24.34■■□□□ 1.49
PTPRF-207ENST00000436724 USP17L5A8MUK1 530 aa24.33■■□□□ 1.49
PTPRF-207ENST00000436724 KLRF2D3W0D1 207 aa24.33■■□□□ 1.49
PTPRF-207ENST00000436724 MARCKSP29966 332 aaPredicted RBP24.33■■□□□ 1.49
PTPRF-207ENST00000436724 TOB1P50616 345 aaPredicted RBP24.33■■□□□ 1.49
PTPRF-207ENST00000436724 NPY5RQ15761 445 aa24.33■■□□□ 1.49
PTPRF-207ENST00000436724 GPKOWQ92917 476 aaPredicted RBP eCLIP24.33■■□□□ 1.49
PTPRF-207ENST00000436724 SHTN1A0MZ66 631 aa24.33■■□□□ 1.48
PTPRF-207ENST00000436724 FAM205CA6NFA0 338 aa24.33■■□□□ 1.48
PTPRF-207ENST00000436724 RASSF7Q02833 373 aa24.33■■□□□ 1.48
PTPRF-207ENST00000436724 KCNG4Q8TDN1 519 aa24.33■■□□□ 1.48
PTPRF-207ENST00000436724 TRIM44Q96DX7 344 aaPredicted RBP24.33■■□□□ 1.48
PTPRF-207ENST00000436724 ENTPD3O75355 529 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 PARP1P09874 1014 aaKnown RBP24.32■■□□□ 1.48
PTPRF-207ENST00000436724 GNAQP50148 359 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 EARS2Q5JPH6 523 aaKnown RBP24.32■■□□□ 1.48
PTPRF-207ENST00000436724 CABP5Q9NP86 173 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 ADAMTS3O15072 1205 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 TTLL1O95922 423 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 ATP2B2Q01814 1243 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 SLC39A14Q15043 492 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 PTPAQ15257 358 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 CIAPIN1Q6FI81 312 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 AGBL3Q8NEM8 1001 aa24.32■■□□□ 1.48
PTPRF-207ENST00000436724 ZNF70Q9UC06 446 aaPredicted RBP24.32■■□□□ 1.48
PTPRF-207ENST00000436724 PDHBP11177 359 aa24.31■■□□□ 1.48
PTPRF-207ENST00000436724 KRT2P35908 639 aa24.31■■□□□ 1.48
PTPRF-207ENST00000436724 PRELPP51888 382 aa24.31■■□□□ 1.48
PTPRF-207ENST00000436724 NOM1Q5C9Z4 860 aaKnown RBP24.31■■□□□ 1.48
PTPRF-207ENST00000436724 CSRNP1Q96S65 589 aa24.31■■□□□ 1.48
PTPRF-207ENST00000436724 NUP62CLQ9H1M0 184 aa24.31■■□□□ 1.48
PTPRF-207ENST00000436724 FRMPD2Q68DX3 1309 aaPredicted RBP24.31■■□□□ 1.48
PTPRF-207ENST00000436724 CERKLQ49MI3 558 aaPredicted RBP24.3■■□□□ 1.48
PTPRF-207ENST00000436724 ADALQ6DHV7 355 aa24.3■■□□□ 1.48
PTPRF-207ENST00000436724 TRIM34Q9BYJ4 488 aa24.3■■□□□ 1.48
PTPRF-207ENST00000436724 ATRNL1Q5VV63 1379 aa24.3■■□□□ 1.48
PTPRF-207ENST00000436724 GREB1LQ9C091 1923 aaPredicted RBP24.3■■□□□ 1.48
PTPRF-207ENST00000436724 ATP2B1P20020 1258 aa24.3■■□□□ 1.48
PTPRF-207ENST00000436724 TYW1BQ6NUM6 668 aa24.3■■□□□ 1.48
PTPRF-207ENST00000436724 FSIP1Q8NA03 581 aa24.3■■□□□ 1.48
PTPRF-207ENST00000436724 TMOD2Q9NZR1 351 aa24.3■■□□□ 1.48
PTPRF-207ENST00000436724 FOXP4Q8IVH2 680 aaPredicted RBP24.29■■□□□ 1.48
PTPRF-207ENST00000436724 CCDC17Q96LX7 622 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 UBA5Q9GZZ9 404 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 TSPY26PQ9H489 355 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 VEZTQ9HBM0 779 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 A0A1B0GVL5 298 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 GDF11O95390 407 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 NLRP5P59047 1200 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 SNW1Q13573 536 aaKnown RBP24.29■■□□□ 1.48
PTPRF-207ENST00000436724 AXDND1Q5T1B0 1012 aaPredicted RBP24.29■■□□□ 1.48
PTPRF-207ENST00000436724 TATDN1Q6P1N9 297 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 RNF214Q8ND24 703 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms