RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 VPS18Q9P253 973 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 CNPY2Q9Y2B0 182 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 HCLS1P14317 486 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 RNASELQ05823 741 aaKnown RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 NMIQ13287 307 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 RETREG2Q8NC44 543 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 SPDYE1Q8NFV5 336 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 DDX27Q96GQ7 796 aaKnown RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 SCYL1Q96KG9 808 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 MBD4O95243 580 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 KRT15P19012 456 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ZNF174Q15697 407 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 TTC31Q49AM3 519 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 DPP9Q86TI2 863 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 NDUFAF2Q8N183 169 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 PLIN2Q99541 437 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 RIC8AQ9NPQ8 531 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 SH3TC1Q8TE82 1336 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 APBA3O96018 575 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 F13A1P00488 732 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ARHGAP27Q6ZUM4 889 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 CCDC84Q86UT8 332 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 CSGALNACT2Q8N6G5 542 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ZNF518AQ6AHZ1 1483 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 RIMS2Q9UQ26 1411 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 A6NJR5 290 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 CCDC105Q8IYK2 499 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 PAGR1Q9BTK6 254 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 RAB20Q9NX57 234 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 CTTNBP2NLQ9P2B4 639 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 A0A1B0GVL5 298 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 THAP12O43422 761 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 CFBP00751 764 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 TYRO3Q06418 890 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 PAK1Q13153 545 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 SLC39A6Q13433 755 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 HDAC1Q13547 482 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ANKRD20A3Q5VUR7 823 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 CREB3L3Q68CJ9 461 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 EXOC4Q96A65 974 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ST7Q9NRC1 585 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ANGPTL3Q9Y5C1 460 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ARHGEF10O15013 1369 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 IQCB1Q15051 598 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 CFAP221Q4G0U5 840 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 NXNQ6DKJ4 435 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ANKRD35Q8N283 1001 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ELMOD1Q8N336 334 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 TTC25Q96NG3 672 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 NAPGQ99747 312 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 EPS15L1Q9UBC2 864 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 SLC13A4Q9UKG4 626 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ITM2BQ9Y287 266 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 FAN1Q9Y2M0 1017 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 TROVE2P10155 538 aaKnown RBP eCLIP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 STX17P56962 302 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 FBXW4P57775 412 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TAF11Q15544 211 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 NSMFQ6X4W1 530 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 CHST3Q7LGC8 479 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 RYBPQ8N488 228 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 AATFQ9NY61 560 aaKnown RBP eCLIP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 JAG2Q9Y219 1238 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 ZSCAN20P17040 1043 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 ITGA6P23229 1130 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 HOXA7P31268 230 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 PDE1AP54750 535 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 MYL5Q02045 173 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 APOBRQ0VD83 1088 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 FAM102BQ5T8I3 360 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 RNF10Q8N5U6 811 aaKnown RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 CDKL2Q92772 493 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 DACT1Q9NYF0 836 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 DONSONQ9NYP3 566 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 ANGEL1Q9UNK9 670 aaKnown RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 ARAP1Q96P48 1450 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 POLGP54098 1239 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TCP10Q12799 353 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 PDCD2Q16342 344 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 HERC4Q5GLZ8 1057 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 MIER3Q7Z3K6 550 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 FAM81BQ96LP2 452 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 RPRD2Q5VT52 1461 aaKnown RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TXKP42681 527 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TFCP2Q12800 502 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 PRKG1Q13976 671 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 JADE1Q6IE81 842 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 REXO1Q8N1G1 1221 aaKnown RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 SNX29Q8TEQ0 813 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 BICC1Q9H694 974 aaKnown RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 UBN1Q9NPG3 1134 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 C1orf112Q9NSG2 853 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TESPA1A2RU30 521 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 CIITAP33076 1130 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TSTA3Q13630 321 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 SFMBT2Q5VUG0 894 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 FBXO31Q5XUX0 539 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 ARMC9Q7Z3E5 817 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 PEX26Q7Z412 305 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 ZBTB33Q86T24 672 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms