RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 DEFB132Q7Z7B7 95 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 GPHNQ9NQX3 736 aaPredicted RBP9.6□□□□□ -0.87
USP54-203ENST00000418501 C10orf71Q711Q0 1435 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 RASA1P20936 1047 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 PLCB2Q00722 1185 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 ST3GAL1Q11201 340 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 GPT2Q8TD30 523 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 USP28Q96RU2 1077 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 H7C1D1 291 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 CDC27P30260 824 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 ABCB5Q2M3G0 1257 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 BLIDQ8IZY5 108 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.59□□□□□ -0.87
USP54-203ENST00000418501 DOCK2Q92608 1830 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 FSD2A1L4K1 749 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 LINC00301Q8NCQ3 95 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 ANKRD20A12PQ8NF67 263 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 DYNLL2Q96FJ2 89 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 TMEM47Q9BQJ4 181 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 NYAP2Q9P242 653 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 A0A0G2JLW4 131 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 ATP2B1P20020 1258 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 DRC7Q8IY82 874 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 VEZTQ9HBM0 779 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 CLIP2Q9UDT6 1046 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 PCDHA4Q9UN74 947 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 BCS1LQ9Y276 419 aa9.59□□□□□ -0.87
USP54-203ENST00000418501 FDPSP14324 419 aaKnown RBP9.59□□□□□ -0.88
USP54-203ENST00000418501 RHBDL3P58872 404 aa9.59□□□□□ -0.88
USP54-203ENST00000418501 TROAPQ12815 778 aa9.59□□□□□ -0.88
USP54-203ENST00000418501 TTC38Q5R3I4 469 aa9.59□□□□□ -0.88
USP54-203ENST00000418501 ZNF579Q8NAF0 562 aaKnown RBP9.59□□□□□ -0.88
USP54-203ENST00000418501 CNNM3Q8NE01 707 aa9.59□□□□□ -0.88
USP54-203ENST00000418501 FAM200AQ8TCP9 573 aa9.59□□□□□ -0.88
USP54-203ENST00000418501 RGS17Q9UGC6 210 aaPredicted RBP9.59□□□□□ -0.88
USP54-203ENST00000418501 CCDC88AQ3V6T2 1871 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 HOXA7P31268 230 aaPredicted RBP9.58□□□□□ -0.88
USP54-203ENST00000418501 SLC4A8Q2Y0W8 1093 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 FAM151AQ8WW52 585 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 LMOD1P29536 600 aaPredicted RBP9.58□□□□□ -0.88
USP54-203ENST00000418501 SLC1A4P43007 532 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 ICA1Q05084 483 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 NONOQ15233 471 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP54-203ENST00000418501 NTRK3Q16288 839 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 CHURC1Q8WUH1 139 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 TNRC6CQ9HCJ0 1690 aaKnown RBP9.58□□□□□ -0.88
USP54-203ENST00000418501 GADD45BO75293 160 aaPredicted RBP9.58□□□□□ -0.88
USP54-203ENST00000418501 ADCY7P51828 1080 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 CDK5RAP3Q96JB5 506 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 MTMR4Q9NYA4 1195 aa9.58□□□□□ -0.88
USP54-203ENST00000418501 ATF5Q9Y2D1 282 aaPredicted RBP9.58□□□□□ -0.88
USP54-203ENST00000418501 MORC2Q9Y6X9 1032 aaPredicted RBP9.58□□□□□ -0.88
USP54-203ENST00000418501 AMPD3Q01432 767 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 CSRNP1Q96S65 589 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 SPON1Q9HCB6 807 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 RMND1Q9NWS8 449 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 TMEM63CQ9P1W3 806 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 MKRN1Q9UHC7 482 aaKnown RBP9.57□□□□□ -0.88
USP54-203ENST00000418501 CBFA2T2O43439 604 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 ZBTB7AO95365 584 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 VIL1P09327 827 aaKnown RBP9.57□□□□□ -0.88
USP54-203ENST00000418501 HS1BP3Q53T59 392 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.57□□□□□ -0.88
USP54-203ENST00000418501 PLIN4Q96Q06 1357 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 STIM1Q13586 685 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 ARL6IP4Q66PJ3 421 aaKnown RBP9.57□□□□□ -0.88
USP54-203ENST00000418501 FAM83AQ86UY5 434 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 FEZ1Q99689 392 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 AS3MTQ9HBK9 375 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 INCENPQ9NQS7 918 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 VPS54Q9P1Q0 977 aa9.57□□□□□ -0.88
USP54-203ENST00000418501 TPM2P07951 284 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 TCP10Q12799 353 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 OTUD7BQ6GQQ9 843 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 DAGLBQ8NCG7 672 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 TCEAL9Q9UHQ7 104 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 MYH13Q9UKX3 1938 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 ESYT2A0FGR8 921 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 BTBD18B2RXH4 712 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 PPP1R2P41236 205 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 PLCD1P51178 756 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 SEMA3FQ13275 785 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 SLFN13Q68D06 897 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 HOMER1Q86YM7 354 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 ELOA2Q8IYF1 753 aaPredicted RBP9.56□□□□□ -0.88
USP54-203ENST00000418501 CEP95Q96GE4 821 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 PHF20Q9BVI0 1012 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 PCDHA7Q9UN72 937 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 KCNJ14Q9UNX9 436 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 PNMA6FA0A0J9YX94 578 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 RAD17O75943 681 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 FOSP01100 380 aaPredicted RBP9.56□□□□□ -0.88
USP54-203ENST00000418501 TYRO3Q06418 890 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 CT47A1Q5JQC4 288 aaPredicted RBP9.56□□□□□ -0.88
USP54-203ENST00000418501 APOBEC3HQ6NTF7 200 aaKnown RBP9.56□□□□□ -0.88
USP54-203ENST00000418501 DTHD1Q6ZMT9 781 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 FAM160B2Q86V87 743 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 REXO1Q8N1G1 1221 aaKnown RBP9.56□□□□□ -0.88
USP54-203ENST00000418501 MAGEF1Q9HAY2 307 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 VAT1LQ9HCJ6 419 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms