RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 GTF3C2Q8WUA4 911 aaPredicted RBP15.68■□□□□ 0.1
LINC00339-202ENST00000416769 DYNLL2Q96FJ2 89 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 MOV10L1Q9BXT6 1211 aaKnown RBP15.68■□□□□ 0.1
LINC00339-202ENST00000416769 STXBP5LQ9Y2K9 1186 aa15.68■□□□□ 0.1
LINC00339-202ENST00000416769 BAZ2AQ9UIF9 1905 aaKnown RBP15.68■□□□□ 0.1
LINC00339-202ENST00000416769 EYSQ5T1H1 3165 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 APBB1O00213 710 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 COBLO75128 1261 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 PDE6AP16499 860 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 RTP1P59025 263 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 ATP2B2Q01814 1243 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 GPR153Q6NV75 609 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 LCORLQ8N3X6 602 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 SMCHD1A6NHR9 2005 aa15.67■□□□□ 0.1
LINC00339-202ENST00000416769 PARP14Q460N5 1801 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 CYP2D7A0A087X1C5 515 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 MAGEB6P1A0A0J9YX57 407 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 MPHOSPH10O00566 681 aaKnown RBP15.66■□□□□ 0.1
LINC00339-202ENST00000416769 PRKAB2O43741 272 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 POLR3DP05423 398 aaPredicted RBP15.66■□□□□ 0.1
LINC00339-202ENST00000416769 HOXC6P09630 235 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 ADORA2AP29274 412 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 RRP1P56182 461 aaKnown RBP15.66■□□□□ 0.1
LINC00339-202ENST00000416769 CCNA1P78396 465 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 SAMD1Q6SPF0 538 aaPredicted RBP15.66■□□□□ 0.1
LINC00339-202ENST00000416769 LBX2Q6XYB7 198 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 TTC6Q86TZ1 520 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 SIAH1Q8IUQ4 282 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 FTSJ3Q8IY81 847 aaKnown RBP15.66■□□□□ 0.1
LINC00339-202ENST00000416769 SPICE1Q8N0Z3 855 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 ZNF532Q9HCE3 1301 aa15.66■□□□□ 0.1
LINC00339-202ENST00000416769 TCRBV5S4A2TA0A5A2 114 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 MYCNP04198 464 aaPredicted RBP15.65■□□□□ 0.1
LINC00339-202ENST00000416769 AKR1B1P15121 316 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 ERCC3P19447 782 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 USP14P54578 494 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 MAP3K12Q12852 859 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 C9orf50Q5SZB4 431 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 LPAR1Q92633 364 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 TANGO6Q9C0B7 1094 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 CABP5Q9NP86 173 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 MCM9Q9NXL9 1143 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 ATP11BQ9Y2G3 1177 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 IVNS1ABPQ9Y6Y0 642 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 COL11A1P12107 1806 aaPredicted RBP15.65■□□□□ 0.1
LINC00339-202ENST00000416769 ZNF236Q9UL36 1845 aa15.65■□□□□ 0.1
LINC00339-202ENST00000416769 MYH8P13535 1937 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 POTEB2H3BUK9 544 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 GOLIM4O00461 696 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 SLC9C2Q5TAH2 1124 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 SH3RF1Q7Z6J0 888 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 ATG4CQ96DT6 458 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 DNAJC2Q99543 621 aaKnown RBP15.64■□□□□ 0.09
LINC00339-202ENST00000416769 SPATC1LQ9H0A9 340 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 ARMT1Q9H993 441 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 DCP1AQ9NPI6 582 aaPredicted RBP15.64■□□□□ 0.09
LINC00339-202ENST00000416769 ZNFX1Q9P2E3 1918 aaKnown RBP15.64■□□□□ 0.09
LINC00339-202ENST00000416769 CDH23Q9H251 3354 aa15.64■□□□□ 0.09
LINC00339-202ENST00000416769 DNM1LO00429 736 aa15.63■□□□□ 0.09
LINC00339-202ENST00000416769 GLRX3O76003 335 aaKnown RBP15.63■□□□□ 0.09
LINC00339-202ENST00000416769 SHHQ15465 462 aa15.63■□□□□ 0.09
LINC00339-202ENST00000416769 TRIM60Q495X7 471 aa15.63■□□□□ 0.09
LINC00339-202ENST00000416769 RHPN1Q8TCX5 695 aa15.63■□□□□ 0.09
LINC00339-202ENST00000416769 FERMT2Q96AC1 680 aa15.63■□□□□ 0.09
LINC00339-202ENST00000416769 LENG1Q96BZ8 264 aaPredicted RBP15.63■□□□□ 0.09
LINC00339-202ENST00000416769 COL25A1Q9BXS0 654 aaPredicted RBP15.63■□□□□ 0.09
LINC00339-202ENST00000416769 VCANP13611 3396 aa15.63■□□□□ 0.09
LINC00339-202ENST00000416769 PLS1Q14651 629 aa15.62■□□□□ 0.09
LINC00339-202ENST00000416769 COG2Q14746 738 aa15.62■□□□□ 0.09
LINC00339-202ENST00000416769 FAM47AQ5JRC9 791 aa15.62■□□□□ 0.09
LINC00339-202ENST00000416769 DPP9Q86TI2 863 aa15.62■□□□□ 0.09
LINC00339-202ENST00000416769 PRDM5Q9NQX1 630 aaPredicted RBP15.62■□□□□ 0.09
LINC00339-202ENST00000416769 FBXO28Q9NVF7 368 aa15.62■□□□□ 0.09
LINC00339-202ENST00000416769 PRUNE2Q8WUY3 3088 aa15.62■□□□□ 0.09
LINC00339-202ENST00000416769 TRIM43BA6NCK2 446 aa15.61■□□□□ 0.09
LINC00339-202ENST00000416769 MBD4O95243 580 aa15.61■□□□□ 0.09
LINC00339-202ENST00000416769 ITGB8P26012 769 aa15.61■□□□□ 0.09
LINC00339-202ENST00000416769 SLC39A5Q6ZMH5 540 aa15.61■□□□□ 0.09
LINC00339-202ENST00000416769 NCAPG2Q86XI2 1143 aa15.61■□□□□ 0.09
LINC00339-202ENST00000416769 SIRT2Q8IXJ6 389 aa15.61■□□□□ 0.09
LINC00339-202ENST00000416769 BADQ92934 168 aa15.61■□□□□ 0.09
LINC00339-202ENST00000416769 TRIM43Q96BQ3 446 aaPredicted RBP15.61■□□□□ 0.09
LINC00339-202ENST00000416769 LBHD1Q9BQE6 289 aaPredicted RBP15.61■□□□□ 0.09
LINC00339-202ENST00000416769 CRNKL1Q9BZJ0 848 aaKnown RBP15.61■□□□□ 0.09
LINC00339-202ENST00000416769 IGSF3O75054 1194 aa15.6■□□□□ 0.09
LINC00339-202ENST00000416769 FLOT1O75955 427 aa15.6■□□□□ 0.09
LINC00339-202ENST00000416769 PGK2P07205 417 aa15.6■□□□□ 0.09
LINC00339-202ENST00000416769 TAL1P17542 331 aaPredicted RBP15.6■□□□□ 0.09
LINC00339-202ENST00000416769 DSG3P32926 999 aa15.6■□□□□ 0.09
LINC00339-202ENST00000416769 ADCYAP1R1P41586 468 aa15.6■□□□□ 0.09
LINC00339-202ENST00000416769 TMEM132BQ14DG7 1078 aa15.6■□□□□ 0.09
LINC00339-202ENST00000416769 OLFML2BQ68BL8 750 aa15.6■□□□□ 0.09
LINC00339-202ENST00000416769 PDLIM7Q9NR12 457 aa15.6■□□□□ 0.09
LINC00339-202ENST00000416769 MSCO60682 206 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 EPHB4P54760 987 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 ICA1Q05084 483 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 LRRC41Q15345 812 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 TMEM179Q6ZVK1 233 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 CERS3Q8IU89 383 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms