RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CCDC144AA2RUR9 1427 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 LRPPRCP42704 1394 aaKnown RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 PRAMEF27A3QJZ7 478 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 GREM1O60565 184 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 ATF3P18847 181 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 EIF2AK2P19525 551 aaKnown RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 ST13P50502 369 aaKnown RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 COL9A2Q14055 689 aaPredicted RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 SKOR2Q2VWA4 1001 aaPredicted RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 TM4SF20Q53R12 229 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 ZNF697Q5TEC3 545 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 GDF6Q6KF10 455 aaPredicted RBP3.31□□□□□ -1.88
MCF2-204ENST00000414978 ANKLE1Q8NAG6 615 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 RHOVQ96L33 236 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 ZIM2Q9NZV7 527 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 KLF15Q9UIH9 416 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 SENP3-EIF4A1A0A087X0R7 540 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 EPB42P16452 691 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 CD33P20138 364 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 SLC19A1P41440 591 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 PWP1Q13610 501 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 ADCY4Q8NFM4 1077 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 STK35Q8TDR2 534 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 COG1Q8WTW3 980 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 FEZ1Q99689 392 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 CDC6Q99741 560 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 ZNF69Q9UC07 566 aa3.31□□□□□ -1.88
MCF2-204ENST00000414978 LY75O60449 1722 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 KIAA1551Q9HCM1 1747 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 GPR25O00155 361 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 TSPAN6O43657 245 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 KPNA6O60684 536 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 ALDH1L1O75891 902 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 UPP2O95045 317 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 TIMP2P16035 220 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 TMPRSS15P98073 1019 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 CEP135Q66GS9 1140 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 C16orf86Q6ZW13 317 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 UNC5CLQ8IV45 518 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 STAG2Q8N3U4 1231 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 XAGE3Q8WTP9 111 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 HPS1Q92902 700 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 NOC4LQ9BVI4 516 aaKnown RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 TRIM8Q9BZR9 551 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 SEC31BQ9NQW1 1179 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 THSD7BQ9C0I4 1608 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 FAM153BP0C7A2 387 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 PRELPP51888 382 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 DHX8Q14562 1220 aaKnown RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 BRD3Q15059 726 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 FAM196AQ6ZSG2 479 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 TTC6Q86TZ1 520 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 NLRP13Q86W25 1043 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 GALNT12Q8IXK2 581 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 PNISRQ8TF01 805 aaKnown RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 ANKRD24Q8TF21 1146 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 CNTNAP3BQ96NU0 1288 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 CNTNAP3Q9BZ76 1288 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 RASSF4Q9H2L5 321 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 TNS3Q68CZ2 1445 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 VIRMAQ69YN4 1812 aaKnown RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 SHTN1A0MZ66 631 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 CCDC189A1A4V9 331 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 PSAPP07602 524 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 CT47B1P0C2W7 299 aaPredicted RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 RAB27AP51159 221 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 GUCY2FP51841 1108 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 SV2CQ496J9 727 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 C10orf62Q5T681 223 aaPredicted RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 KIAA1211LQ6NV74 962 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 REC114Q7Z4M0 266 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 LSRQ86X29 649 aaPredicted RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 LINC00528Q8N1L1 170 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 SDR16C5Q8N3Y7 309 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 CAMKK2Q96RR4 588 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 ZIC5Q96T25 663 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.3□□□□□ -1.88
MCF2-204ENST00000414978 NRXN1Q9ULB1 1477 aa3.3□□□□□ -1.88
MCF2-204ENST00000414978 ECEL1O95672 775 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 SCGB1D2O95969 90 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 CPB1P15086 417 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 MSX1P28360 303 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 TCIRG1Q13488 830 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 TTF1Q15361 905 aaPredicted RBP3.29□□□□□ -1.88
MCF2-204ENST00000414978 FXNQ16595 210 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 VHLLQ6RSH7 139 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 KRBA2Q6ZNG9 492 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 LHFPL2Q6ZUX7 228 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 FRMD6Q96NE9 622 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 CCDC113Q9H0I3 377 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 SH2B1Q9NRF2 756 aaPredicted RBP3.29□□□□□ -1.88
MCF2-204ENST00000414978 BSDC1Q9NW68 430 aaPredicted RBP3.29□□□□□ -1.88
MCF2-204ENST00000414978 MAP3K20Q9NYL2 800 aaKnown RBP3.29□□□□□ -1.88
MCF2-204ENST00000414978 FAM50BQ9Y247 325 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 UPK3BL1B0FP48 263 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 UPK3BL2E5RIL1 263 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 RPLP1P05386 114 aaKnown RBP3.29□□□□□ -1.88
MCF2-204ENST00000414978 SERPINB3P29508 390 aa3.29□□□□□ -1.88
MCF2-204ENST00000414978 FAM209AQ5JX71 171 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms