RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ITGA6P23229 1130 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 ATP2C1P98194 919 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 CDK17Q00537 523 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 RAD51AP2Q09MP3 1159 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 WTAPQ15007 396 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 COBLL1Q53SF7 1204 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 CYP26C1Q6V0L0 522 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 LDHAL6AQ6ZMR3 332 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 MICU3Q86XE3 530 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 IGSF22Q8N9C0 903 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 AIDAQ96BJ3 306 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 PAGE5Q96GU1 130 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 NAPGQ99747 312 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 NAPBQ9H115 298 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 ZBTB3Q9H5J0 574 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 BCL9O00512 1426 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 CDK5RAP2Q96SN8 1893 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 STK25O00506 426 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 FOXN1O15353 648 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 DDAH1O94760 285 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 STARD3NLO95772 234 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 GYPCP04921 128 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 CAPN2P17655 700 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 ATF3P18847 181 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 ARHGAP25P42331 645 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 RBL2Q08999 1139 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 ZSCAN26Q16670 478 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 TAF7LQ5H9L4 462 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 FOXR2Q6PJQ5 311 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 NFXL1Q6ZNB6 911 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 ZNF654Q8IZM8 581 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 SPATA5Q8NB90 893 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 RETREG2Q8NC44 543 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 EHBP1Q8NDI1 1231 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 NKX2-3Q8TAU0 364 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 NOC3LQ8WTT2 800 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 EFCC1Q9HA90 598 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 SENP2Q9HC62 589 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 SAMSN1Q9NSI8 373 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 PCDHB6Q9Y5E3 794 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 SOS2Q07890 1332 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 DDX60LQ5H9U9 1706 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ANO9A1A5B4 782 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ERICH2A1L162 156 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 SEC31AO94979 1220 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 KRT2P35908 639 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 PPP1R2P41236 205 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ADKP55263 362 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 KCNB1Q14721 858 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 FIGNQ5HY92 759 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 PAPD7Q5XG87 772 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 TRAPPC11Q7Z392 1133 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ZNF34Q8IZ26 560 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 FBXW7Q969H0 707 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 DNAJC7Q99615 494 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 CSRNP2Q9H175 543 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 HAUS4Q9H6D7 363 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 MAGEF1Q9HAY2 307 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ABHD10Q9NUJ1 306 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 FEZ2Q9UHY8 353 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 MYH7BA7E2Y1 1941 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 FOCADQ5VW36 1801 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ZNF804BA4D1E1 1349 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 SOWAHDA6NJG2 315 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 H7C1D1 291 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 PKN1Q16512 942 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 MEA1Q16626 185 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 MAP9Q49MG5 647 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ZNF658Q5TYW1 1059 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 PDXDC2PQ6P474 469 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ARHGAP27Q6ZUM4 889 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 ANKRD20A12PQ8NF67 263 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 BRIP1Q9BX63 1249 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 GREM2Q9H772 168 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 SH3GLB2Q9NR46 395 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 TACC3Q9Y6A5 838 aa6.49□□□□□ -1.37
CCDC88A-203ENST00000412148 CTAGE15A4D2H0 777 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 A6NNZ2 444 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 H3BQF6 201 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 CTAGE8P0CG41 777 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 CD44P16070 742 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 PRLRP16471 622 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 EEF1GP26641 437 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 ST5P78524 1137 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 NPY5RQ15761 445 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 TUBB8Q3ZCM7 444 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 SRLQ86TD4 932 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 CTAGE6Q86UF2 777 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 CTAGE4Q8IX94 777 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 NAV1Q8NEY1 1877 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 PURBQ96QR8 312 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 THAP9Q9H5L6 903 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 DENND2AQ9ULE3 1009 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 COL1A1P02452 1464 aaPredicted RBP6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 TEX33O43247 280 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 GUCY1A2P33402 732 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 LONP1P36776 959 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 IL6STP40189 918 aaPredicted RBP6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 PHKA1P46020 1223 aa6.48□□□□□ -1.37
CCDC88A-203ENST00000412148 GRIN1Q05586 938 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms