RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TYW1BQ6NUM6 668 aa15.21■□□□□ 0.02
VPS54-203ENST00000409558 LRRC47Q8N1G4 583 aaKnown RBP15.21■□□□□ 0.02
VPS54-203ENST00000409558 PUF60Q9UHX1 559 aaKnown RBP15.21■□□□□ 0.02
VPS54-203ENST00000409558 FAM205AQ6ZU69 1335 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 AKAP11Q9UKA4 1901 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 AMOTL1Q8IY63 956 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 IGSF22Q8N9C0 903 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 ACTN4O43707 911 aaKnown RBP15.2■□□□□ 0.02
VPS54-203ENST00000409558 SLU7O95391 586 aaKnown RBP15.2■□□□□ 0.02
VPS54-203ENST00000409558 DOK7Q18PE1 504 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.2■□□□□ 0.02
VPS54-203ENST00000409558 SSBP05455 408 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS54-203ENST00000409558 STAT6P42226 847 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 FBXO38Q6PIJ6 1188 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 VSTM4Q8IW00 320 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 GPCPD1Q9NPB8 672 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 SYNRGQ9UMZ2 1314 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 NUP188Q5SRE5 1749 aa15.2■□□□□ 0.02
VPS54-203ENST00000409558 CACNB3P54284 484 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 DPYDQ12882 1025 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 TEX11Q8IYF3 940 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 CCDC12Q8WUD4 166 aaPredicted RBP15.19■□□□□ 0.02
VPS54-203ENST00000409558 WDR24Q96S15 920 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 NUP88Q99567 741 aaPredicted RBP15.19■□□□□ 0.02
VPS54-203ENST00000409558 LAMB4A4D0S4 1761 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 GTF2IP78347 998 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 BIN2Q9UBW5 565 aaPredicted RBP15.19■□□□□ 0.02
VPS54-203ENST00000409558 NAPAP54920 295 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 RBL2Q08999 1139 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 SF3B3Q15393 1217 aaKnown RBP15.19■□□□□ 0.02
VPS54-203ENST00000409558 KMT5BQ4FZB7 885 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 CCDC178Q5BJE1 867 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 MFSD14BQ5SR56 506 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 CDCA7Q9BWT1 371 aaPredicted RBP15.19■□□□□ 0.02
VPS54-203ENST00000409558 OSBPL5Q9H0X9 879 aaPredicted RBP15.19■□□□□ 0.02
VPS54-203ENST00000409558 ERICH4A6NGS2 130 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 MARCH6O60337 910 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 UBA7P41226 1012 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 BTDP43251 543 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 ZNF771Q7L3S4 317 aaPredicted RBP15.19■□□□□ 0.02
VPS54-203ENST00000409558 FBXO33Q7Z6M2 555 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 CCDC34Q96HJ3 373 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 TIGD1Q96MW7 591 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 PHF20Q9BVI0 1012 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 NARFQ9UHQ1 456 aa15.19■□□□□ 0.02
VPS54-203ENST00000409558 SEC31AO94979 1220 aaKnown RBP15.18■□□□□ 0.02
VPS54-203ENST00000409558 CASP14P31944 242 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 RAD51AP2Q09MP3 1159 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 MSL1Q68DK7 614 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 NYAP1Q6ZVC0 841 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 UBXN4Q92575 508 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 TMEM60Q9H2L4 133 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 IL17RBQ9NRM6 502 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 PPP2R2CQ9Y2T4 447 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 BAZ2AQ9UIF9 1905 aaKnown RBP15.18■□□□□ 0.02
VPS54-203ENST00000409558 MYH2Q9UKX2 1941 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 IKBKBO14920 756 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 POLR3GO15318 223 aaPredicted RBP15.18■□□□□ 0.02
VPS54-203ENST00000409558 SPECC1LQ69YQ0 1117 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 MTERF4Q7Z6M4 381 aaKnown RBP15.18■□□□□ 0.02
VPS54-203ENST00000409558 PRPF3O43395 683 aaKnown RBP15.18■□□□□ 0.02
VPS54-203ENST00000409558 TCP10Q12799 353 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 NYXQ9GZU5 481 aa15.18■□□□□ 0.02
VPS54-203ENST00000409558 CCNT1O60563 726 aaKnown RBP15.17■□□□□ 0.02
VPS54-203ENST00000409558 RBM5P52756 815 aaKnown RBP eCLIP15.17■□□□□ 0.02
VPS54-203ENST00000409558 MDM2Q00987 491 aaPredicted RBP15.17■□□□□ 0.02
VPS54-203ENST00000409558 CLEC4GQ6UXB4 293 aa15.17■□□□□ 0.02
VPS54-203ENST00000409558 IMPACTQ9P2X3 320 aa15.17■□□□□ 0.02
VPS54-203ENST00000409558 CNTNAP5Q8WYK1 1306 aa15.17■□□□□ 0.02
VPS54-203ENST00000409558 NUP98P52948 1817 aa15.17■□□□□ 0.02
VPS54-203ENST00000409558 ACRBPQ8NEB7 543 aa15.17■□□□□ 0.02
VPS54-203ENST00000409558 MYH14Q7Z406 1995 aaKnown RBP15.17■□□□□ 0.02
VPS54-203ENST00000409558 DISP2A7MBM2 1401 aa15.17■□□□□ 0.02
VPS54-203ENST00000409558 GTF2F1P35269 517 aaKnown RBP eCLIP15.17■□□□□ 0.023e-6■■■■□ 19.7
VPS54-203ENST00000409558 ENOX2Q16206 610 aaKnown RBP15.17■□□□□ 0.02
VPS54-203ENST00000409558 COA7Q96BR5 231 aa15.17■□□□□ 0.02
VPS54-203ENST00000409558 STK36Q9NRP7 1315 aa15.17■□□□□ 0.02
VPS54-203ENST00000409558 KLRF2D3W0D1 207 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 RPS6KA4O75676 772 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 SLC16A2P36021 539 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 GPSM2P81274 684 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 IL17AQ16552 155 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 BLIDQ8IZY5 108 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 MLKLQ8NB16 471 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 POLD4Q9HCU8 107 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 DACH1Q9UI36 760 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 TOM1O60784 492 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 ABL1P00519 1130 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 IDEP14735 1019 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 TECP42680 631 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 TXKP42681 527 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 BRIP1Q9BX63 1249 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 TMEM260Q9NX78 707 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 CASQ1P31415 396 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 KIF5BP33176 963 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 DYMQ7RTS9 669 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 ZHX3Q9H4I2 956 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 SLFN14P0C7P3 912 aa15.16■□□□□ 0.02
VPS54-203ENST00000409558 ETF1P62495 437 aaKnown RBP15.16■□□□□ 0.02
VPS54-203ENST00000409558 FUT2Q10981 343 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms