RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ODF2Q5BJF6 829 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 CACNA2D4Q7Z3S7 1137 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 DGKHQ86XP1 1220 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 CNKSR2Q8WXI2 1034 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 LRWD1Q9UFC0 647 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 POLRMTO00411 1230 aaKnown RBP10.29□□□□□ -0.76
LIG4-202ENST00000405925 ENOX2Q16206 610 aaKnown RBP10.29□□□□□ -0.76
LIG4-202ENST00000405925 MNS1Q8NEH6 495 aa10.29□□□□□ -0.76
LIG4-202ENST00000405925 DDX39AO00148 427 aaKnown RBP10.28□□□□□ -0.76
LIG4-202ENST00000405925 N4BP3O15049 544 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 CALCRLQ16602 461 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 STOX1Q6ZVD7 989 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 RASGRP4Q8TDF6 673 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 MTFR1LQ9H019 292 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 LMBRD1Q9NUN5 540 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 POLLQ9UGP5 575 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 ZNF142P52746 1687 aaPredicted RBP10.28□□□□□ -0.76
LIG4-202ENST00000405925 BMP3P12645 472 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 MB21D2Q8IYB1 491 aaPredicted RBP10.28□□□□□ -0.76
LIG4-202ENST00000405925 SNX29Q8TEQ0 813 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 LUC7LQ9NQ29 371 aaKnown RBP10.28□□□□□ -0.76
LIG4-202ENST00000405925 PEAK1Q9H792 1746 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 A0A0U1RQG5 324 aaPredicted RBP10.28□□□□□ -0.76
LIG4-202ENST00000405925 NEMFO60524 1076 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 NCAPH2Q6IBW4 605 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 CCDC70Q6NSX1 233 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 POTEAQ6S8J7 498 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.28□□□□□ -0.76
LIG4-202ENST00000405925 TMC6Q7Z403 805 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 STAMQ92783 540 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 BICD1Q96G01 975 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 PIGSQ96S52 555 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 AMNQ9BXJ7 453 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 CPVLQ9H3G5 476 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 SUGT1Q9Y2Z0 365 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 PLEKHA8P1O95397 391 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 ASNSP08243 561 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 PLCD1P51178 756 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 TMEM179Q6ZVK1 233 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 ENAHQ8N8S7 591 aaPredicted RBP10.28□□□□□ -0.76
LIG4-202ENST00000405925 CCPG1Q9ULG6 757 aa10.28□□□□□ -0.76
LIG4-202ENST00000405925 FAM13AO94988 1023 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 ZNF202O95125 648 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 FMNL1O95466 1100 aaPredicted RBP10.27□□□□□ -0.77
LIG4-202ENST00000405925 NR5A1Q13285 461 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 SEPT2Q15019 361 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 CCDC125Q86Z20 511 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 CEP95Q96GE4 821 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 TMEM47Q9BQJ4 181 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.27□□□□□ -0.77
LIG4-202ENST00000405925 HAUS3Q68CZ6 603 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 FERMT2Q96AC1 680 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 GJB4Q9NTQ9 266 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 MRPL11Q9Y3B7 192 aaKnown RBP10.27□□□□□ -0.77
LIG4-202ENST00000405925 CCP110O43303 1012 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 FGFR2P21802 821 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 SV2BQ7L1I2 683 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 ZNF397Q8NF99 534 aaPredicted RBP10.27□□□□□ -0.77
LIG4-202ENST00000405925 ERCC4Q92889 916 aaPredicted RBP10.27□□□□□ -0.77
LIG4-202ENST00000405925 COA7Q96BR5 231 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 TTC14Q96N46 770 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 BCL2L12Q9HB09 334 aa10.27□□□□□ -0.77
LIG4-202ENST00000405925 ESPNB1AK53 854 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 C12orf60Q5U649 245 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 NEK8Q86SG6 692 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 NUP88Q99567 741 aaPredicted RBP10.26□□□□□ -0.77
LIG4-202ENST00000405925 ZNF341Q9BYN7 854 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 LTN1O94822 1766 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 UBASH3AP57075 661 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 MMRN2Q9H8L6 949 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 TAF6LQ9Y6J9 622 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 PRR16Q569H4 304 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 FAM114A1Q8IWE2 563 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 VTI1AQ96AJ9 217 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 TCHPQ9BT92 498 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 MAPK8IP1Q9UQF2 711 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 ROBO1Q9Y6N7 1651 aa10.26□□□□□ -0.77
LIG4-202ENST00000405925 GCOM1H8Y6P7 765 aaPredicted RBP10.25□□□□□ -0.77
LIG4-202ENST00000405925 RGL2O15211 777 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 POLR2MP0CAP2 368 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 TDRD12Q587J7 1177 aaKnown RBP10.25□□□□□ -0.77
LIG4-202ENST00000405925 MICALL2Q8IY33 904 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 CAGE1Q8TC20 777 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 WRNIP1Q96S55 665 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 FTOQ9C0B1 505 aaKnown RBP eCLIP10.25□□□□□ -0.77
LIG4-202ENST00000405925 EPB41L4AQ9HCS5 686 aaPredicted RBP10.25□□□□□ -0.77
LIG4-202ENST00000405925 PHLPP1O60346 1717 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 FLT1P17948 1338 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 TESPA1A2RU30 521 aaPredicted RBP10.25□□□□□ -0.77
LIG4-202ENST00000405925 PSMD14O00487 310 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 STAT2P52630 851 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 CETN1Q12798 172 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 PTGDRQ13258 359 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 UVSSAQ2YD98 709 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 LUZP1Q86V48 1076 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 ANKRD35Q8N283 1001 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 CLSTN2Q9H4D0 955 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 LY9Q9HBG7 655 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 CNOT7Q9UIV1 285 aaKnown RBP10.25□□□□□ -0.77
LIG4-202ENST00000405925 CLIC4Q9Y696 253 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms