RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 LARGE1O95461 756 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 CALM1P0DP23 149 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 CALM2P0DP24 149 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 CALM3P0DP25 149 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 RXRAP19793 462 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 METAP2P50579 478 aaKnown RBP eCLIP21.11■□□□□ 0.97
SDC1-203ENST00000403076 CCT2P78371 535 aaKnown RBP21.11■□□□□ 0.97
SDC1-203ENST00000403076 CCDC144CPQ8IYA2 1237 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 ACER1Q8TDN7 264 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 CLMNQ96JQ2 1002 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 SNCAIPQ9Y6H5 919 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 ATAD5Q96QE3 1844 aa21.1■□□□□ 0.97
SDC1-203ENST00000403076 ECE1P42892 770 aa21.1■□□□□ 0.97
SDC1-203ENST00000403076 NECAB1Q8N987 351 aa21.1■□□□□ 0.97
SDC1-203ENST00000403076 DOCK1Q14185 1865 aa21.1■□□□□ 0.97
SDC1-203ENST00000403076 A0A1W2PRG0 241 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 PFKFB2O60825 505 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 HSP90AA1P07900 732 aaKnown RBP21.09■□□□□ 0.97
SDC1-203ENST00000403076 LDLRAD1Q5T700 205 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 CST9Q5W186 159 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 CTCFLQ8NI51 663 aaPredicted RBP21.09■□□□□ 0.97
SDC1-203ENST00000403076 SLC10A4Q96EP9 437 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 GOPCQ9HD26 462 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 ISY1Q9ULR0 285 aaKnown RBP21.09■□□□□ 0.97
SDC1-203ENST00000403076 TMX2Q9Y320 296 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 TROAPQ12815 778 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 SPP2Q13103 211 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 ZYXQ15942 572 aaKnown RBP21.09■□□□□ 0.97
SDC1-203ENST00000403076 ERO1BQ86YB8 467 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 CCDC83Q8IWF9 413 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 FANCBQ8NB91 859 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 ZNF280CQ8ND82 737 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 WDR18Q9BV38 432 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 HPS5Q9UPZ3 1129 aa21.09■□□□□ 0.97
SDC1-203ENST00000403076 PAPPA2Q9BXP8 1791 aa21.08■□□□□ 0.97
SDC1-203ENST00000403076 PASKQ96RG2 1323 aa21.08■□□□□ 0.96
SDC1-203ENST00000403076 UNCXA6NJT0 531 aa21.08■□□□□ 0.96
SDC1-203ENST00000403076 TRIM75PA6NK02 468 aa21.08■□□□□ 0.96
SDC1-203ENST00000403076 USP17L10C9JJH3 530 aa21.08■□□□□ 0.96
SDC1-203ENST00000403076 RCAN1P53805 252 aa21.08■□□□□ 0.96
SDC1-203ENST00000403076 RTN1Q16799 776 aa21.08■□□□□ 0.96
SDC1-203ENST00000403076 SLFN13Q68D06 897 aa21.08■□□□□ 0.96
SDC1-203ENST00000403076 NCOA5Q9HCD5 579 aaKnown RBP21.08■□□□□ 0.96
SDC1-203ENST00000403076 SYNPO2Q9UMS6 1093 aa21.08■□□□□ 0.96
SDC1-203ENST00000403076 CCDC196A0A1B0GTZ2 297 aa21.07■□□□□ 0.96
SDC1-203ENST00000403076 F5H6K3 240 aa21.07■□□□□ 0.96
SDC1-203ENST00000403076 CPLX1O14810 134 aa21.07■□□□□ 0.96
SDC1-203ENST00000403076 DHX16O60231 1041 aaKnown RBP21.07■□□□□ 0.96
SDC1-203ENST00000403076 KIF5BP33176 963 aa21.07■□□□□ 0.96
SDC1-203ENST00000403076 KLRC3Q07444 240 aa21.07■□□□□ 0.96
SDC1-203ENST00000403076 FSTL1Q12841 308 aa21.07■□□□□ 0.96
SDC1-203ENST00000403076 CCDC96Q2M329 555 aa21.07■□□□□ 0.96
SDC1-203ENST00000403076 GTF3C6Q969F1 213 aa21.07■□□□□ 0.96
SDC1-203ENST00000403076 MYH4Q9Y623 1939 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 PARP1P09874 1014 aaKnown RBP21.06■□□□□ 0.96
SDC1-203ENST00000403076 SLC4A3P48751 1232 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 USP14P54578 494 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 HUNKP57058 714 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 PPATQ06203 517 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 SCRN1Q12765 414 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 PPP2R5BQ15173 497 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 CPLX2Q6PUV4 134 aaKnown RBP21.06■□□□□ 0.96
SDC1-203ENST00000403076 GMCL1P1Q8NEA9 526 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 CNKSR2Q8WXI2 1034 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 OTUD5Q96G74 571 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 VCPKMTQ9H867 229 aa21.06■□□□□ 0.96
SDC1-203ENST00000403076 TRPM7Q96QT4 1865 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 SPDYE5A6NIY4 337 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 PDHBP11177 359 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 SLC1A4P43007 532 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 MTMR2Q13614 643 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 GRM4Q14833 912 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 USP17L2Q6R6M4 530 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 SPICE1Q8N0Z3 855 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 SPRYD3Q8NCJ5 442 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 MAP3K14Q99558 947 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 KIAA1683Q9H0B3 1180 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 FOXD4L1Q9NU39 408 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 RBM28Q9NW13 759 aaKnown RBP21.05■□□□□ 0.96
SDC1-203ENST00000403076 AFG3L2Q9Y4W6 797 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 OTOFQ9HC10 1997 aa21.05■□□□□ 0.96
SDC1-203ENST00000403076 NDUFB10O96000 172 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 CDC27P30260 824 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 ADD1P35611 737 aaKnown RBP21.04■□□□□ 0.96
SDC1-203ENST00000403076 BACE1P56817 501 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 DCAF4Q8WV16 495 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 OPTNQ96CV9 577 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 C19orf81C9J6K1 198 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 GOLGA8HP0CJ92 632 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 GNAQP50148 359 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 CUL4AQ13619 759 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 RASGRP2Q7LDG7 609 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 IPO9Q96P70 1041 aaKnown RBP21.04■□□□□ 0.96
SDC1-203ENST00000403076 GPCPD1Q9NPB8 672 aa21.04■□□□□ 0.96
SDC1-203ENST00000403076 FRMPD2Q68DX3 1309 aaPredicted RBP21.03■□□□□ 0.96
SDC1-203ENST00000403076 PPIL2Q13356 520 aa21.03■□□□□ 0.96
SDC1-203ENST00000403076 ASPRV1Q53RT3 343 aa21.03■□□□□ 0.96
SDC1-203ENST00000403076 KCTD1Q719H9 257 aa21.03■□□□□ 0.96
SDC1-203ENST00000403076 CCDC82Q8N4S0 544 aa21.03■□□□□ 0.96
SDC1-203ENST00000403076 GMCL1Q96IK5 515 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms