RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 SPDYE2Q495Y8 402 aa29.62■■■□□ 2.33
CPNE1-205ENST00000401607 FOXP4Q8IVH2 680 aaPredicted RBP29.62■■■□□ 2.33
CPNE1-205ENST00000401607 CCDC17Q96LX7 622 aa29.62■■■□□ 2.33
CPNE1-205ENST00000401607 POLR3EQ9NVU0 708 aa29.62■■■□□ 2.33
CPNE1-205ENST00000401607 CLIC4Q9Y696 253 aa29.62■■■□□ 2.33
CPNE1-205ENST00000401607 GOLGA6L3A6NEY3 463 aa29.62■■■□□ 2.33
CPNE1-205ENST00000401607 BTBD18B2RXH4 712 aa29.62■■■□□ 2.33
CPNE1-205ENST00000401607 SAFBQ15424 915 aaKnown RBP eCLIP29.62■■■□□ 2.331e-17■■■■□ 20.2
CPNE1-205ENST00000401607 ZBED3Q96IU2 234 aaPredicted RBP29.62■■■□□ 2.33
CPNE1-205ENST00000401607 NASPP49321 788 aaPredicted RBP29.61■■■□□ 2.33
CPNE1-205ENST00000401607 TATDN1Q6P1N9 297 aa29.61■■■□□ 2.33
CPNE1-205ENST00000401607 PHF20Q9BVI0 1012 aa29.61■■■□□ 2.33
CPNE1-205ENST00000401607 FOXP1Q9H334 677 aaPredicted RBP29.61■■■□□ 2.33
CPNE1-205ENST00000401607 TCP10L2B9ZVM9 353 aa29.6■■■□□ 2.33
CPNE1-205ENST00000401607 SCG2P13521 617 aa29.6■■■□□ 2.33
CPNE1-205ENST00000401607 XBP1P17861 261 aa29.6■■■□□ 2.33
CPNE1-205ENST00000401607 TNIP1Q15025 636 aa29.6■■■□□ 2.33
CPNE1-205ENST00000401607 PFKFB3Q16875 520 aaPredicted RBP29.6■■■□□ 2.33
CPNE1-205ENST00000401607 NOSTRINQ8IVI9 506 aa29.6■■■□□ 2.33
CPNE1-205ENST00000401607 LINC00301Q8NCQ3 95 aa29.6■■■□□ 2.33
CPNE1-205ENST00000401607 SPON1Q9HCB6 807 aa29.6■■■□□ 2.33
CPNE1-205ENST00000401607 GOLGA6L4A6NEF3 574 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 CYTH3O43739 400 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 TTLL1O95922 423 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 LIG1P18858 919 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 CNTNAP1P78357 1384 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 SYCE3A1L190 88 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 MPHOSPH10O00566 681 aaKnown RBP29.59■■■□□ 2.33
CPNE1-205ENST00000401607 YEATS4O95619 227 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 GOLGA8HP0CJ92 632 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 VEGFAP15692 232 aaPredicted RBP29.59■■■□□ 2.33
CPNE1-205ENST00000401607 EIF6P56537 245 aaKnown RBP29.59■■■□□ 2.33
CPNE1-205ENST00000401607 CCDC183Q5T5S1 534 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 ANO1Q5XXA6 986 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 LRRC47Q8N1G4 583 aaKnown RBP29.59■■■□□ 2.33
CPNE1-205ENST00000401607 OXER1Q8TDS5 423 aa29.59■■■□□ 2.33
CPNE1-205ENST00000401607 ISY1Q9ULR0 285 aaKnown RBP29.59■■■□□ 2.33
CPNE1-205ENST00000401607 SHTN1A0MZ66 631 aa29.58■■■□□ 2.33
CPNE1-205ENST00000401607 PARP1P09874 1014 aaKnown RBP29.58■■■□□ 2.33
CPNE1-205ENST00000401607 CERKLQ49MI3 558 aaPredicted RBP29.58■■■□□ 2.33
CPNE1-205ENST00000401607 USP17L2Q6R6M4 530 aa29.58■■■□□ 2.33
CPNE1-205ENST00000401607 PIBF1Q8WXW3 757 aa29.58■■■□□ 2.33
CPNE1-205ENST00000401607 LZTS2Q9BRK4 669 aa29.58■■■□□ 2.33
CPNE1-205ENST00000401607 CLIP2Q9UDT6 1046 aa29.58■■■□□ 2.33
CPNE1-205ENST00000401607 NR5A1Q13285 461 aa29.57■■■□□ 2.32
CPNE1-205ENST00000401607 SHROOM1Q2M3G4 852 aaPredicted RBP29.57■■■□□ 2.32
CPNE1-205ENST00000401607 FAM151AQ8WW52 585 aa29.57■■■□□ 2.32
CPNE1-205ENST00000401607 CSRNP1Q96S65 589 aa29.57■■■□□ 2.32
CPNE1-205ENST00000401607 TRIM34Q9BYJ4 488 aa29.57■■■□□ 2.32
CPNE1-205ENST00000401607 KLRF2D3W0D1 207 aa29.57■■■□□ 2.32
CPNE1-205ENST00000401607 PDHBP11177 359 aa29.57■■■□□ 2.32
CPNE1-205ENST00000401607 NPY5RQ15761 445 aa29.57■■■□□ 2.32
CPNE1-205ENST00000401607 USP17L5A8MUK1 530 aa29.56■■■□□ 2.32
CPNE1-205ENST00000401607 FZD9O00144 591 aa29.56■■■□□ 2.32
CPNE1-205ENST00000401607 STK38Q15208 465 aa29.56■■■□□ 2.32
CPNE1-205ENST00000401607 FKBP1CQ5VVH2 108 aa29.56■■■□□ 2.32
CPNE1-205ENST00000401607 SPZ1Q9BXG8 430 aa29.56■■■□□ 2.32
CPNE1-205ENST00000401607 MYOZ2Q9NPC6 264 aa29.56■■■□□ 2.32
CPNE1-205ENST00000401607 BAZ2BQ9UIF8 2168 aaKnown RBP29.56■■■□□ 2.32
CPNE1-205ENST00000401607 WNT10BO00744 389 aa29.55■■■□□ 2.32
CPNE1-205ENST00000401607 SNHG28P0DPA3 235 aa29.55■■■□□ 2.32
CPNE1-205ENST00000401607 ZNF280AP59817 542 aaPredicted RBP29.55■■■□□ 2.32
CPNE1-205ENST00000401607 BICD2Q8TD16 824 aa29.55■■■□□ 2.32
CPNE1-205ENST00000401607 RPS12P25398 132 aaKnown RBP29.54■■■□□ 2.32
CPNE1-205ENST00000401607 KCNG4Q8TDN1 519 aa29.54■■■□□ 2.32
CPNE1-205ENST00000401607 CPVLQ9H3G5 476 aa29.54■■■□□ 2.32
CPNE1-205ENST00000401607 VEZTQ9HBM0 779 aa29.54■■■□□ 2.32
CPNE1-205ENST00000401607 PCDHA7Q9UN72 937 aa29.54■■■□□ 2.32
CPNE1-205ENST00000401607 KRT2P35908 639 aa29.54■■■□□ 2.32
CPNE1-205ENST00000401607 SF3A1Q15459 793 aaKnown RBP29.54■■■□□ 2.32
CPNE1-205ENST00000401607 NBPF9Q3BBW0 867 aa29.54■■■□□ 2.32
CPNE1-205ENST00000401607 MYH4Q9Y623 1939 aa29.54■■■□□ 2.32
CPNE1-205ENST00000401607 SPTLC2O15270 562 aa29.53■■■□□ 2.32
CPNE1-205ENST00000401607 ME1P48163 572 aa29.53■■■□□ 2.32
CPNE1-205ENST00000401607 PPP4R3BQ5MIZ7 849 aa29.53■■■□□ 2.32
CPNE1-205ENST00000401607 LRSAM1Q6UWE0 723 aa29.53■■■□□ 2.32
CPNE1-205ENST00000401607 SMARCA1P28370 1054 aa29.52■■■□□ 2.32
CPNE1-205ENST00000401607 MMP14P50281 582 aa29.52■■■□□ 2.32
CPNE1-205ENST00000401607 TOB1P50616 345 aaPredicted RBP29.52■■■□□ 2.32
CPNE1-205ENST00000401607 SLC39A14Q15043 492 aa29.52■■■□□ 2.32
CPNE1-205ENST00000401607 PTPAQ15257 358 aa29.52■■■□□ 2.32
CPNE1-205ENST00000401607 HERC5Q9UII4 1024 aaKnown RBP29.52■■■□□ 2.32
CPNE1-205ENST00000401607 RRP1BQ14684 758 aaKnown RBP29.52■■■□□ 2.32
CPNE1-205ENST00000401607 L1TD1Q5T7N2 865 aaKnown RBP29.52■■■□□ 2.32
CPNE1-205ENST00000401607 FAM83AQ86UY5 434 aa29.52■■■□□ 2.32
CPNE1-205ENST00000401607 TNFRSF25Q93038 417 aa29.52■■■□□ 2.32
CPNE1-205ENST00000401607 MYO1BO43795 1136 aa29.51■■■□□ 2.31
CPNE1-205ENST00000401607 GDF11O95390 407 aa29.51■■■□□ 2.31
CPNE1-205ENST00000401607 ASPRV1Q53RT3 343 aa29.51■■■□□ 2.31
CPNE1-205ENST00000401607 TMEM179Q6ZVK1 233 aa29.51■■■□□ 2.31
CPNE1-205ENST00000401607 GPKOWQ92917 476 aaPredicted RBP eCLIP29.51■■■□□ 2.311e-7■■■■□ 26.1
CPNE1-205ENST00000401607 KANSL2Q9H9L4 492 aa29.51■■■□□ 2.31
CPNE1-205ENST00000401607 SH3GLB2Q9NR46 395 aa29.51■■■□□ 2.31
CPNE1-205ENST00000401607 DACT1Q9NYF0 836 aa29.51■■■□□ 2.31
CPNE1-205ENST00000401607 NYAP2Q9P242 653 aa29.51■■■□□ 2.31
CPNE1-205ENST00000401607 FRMPD2Q68DX3 1309 aaPredicted RBP29.51■■■□□ 2.31
CPNE1-205ENST00000401607 GMPSP49915 693 aaPredicted RBP29.5■■■□□ 2.31
CPNE1-205ENST00000401607 JAG1P78504 1218 aa29.5■■■□□ 2.31
CPNE1-205ENST00000401607 ATP2B2Q01814 1243 aa29.5■■■□□ 2.31
CPNE1-205ENST00000401607 SEPT2Q15019 361 aa29.5■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 1087.6 ms