RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CDC37L1Q7L3B6 337 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 DPP9Q86TI2 863 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 DIS3L2Q8IYB7 885 aaKnown RBP11.76□□□□□ -0.53
COL6A3-205ENST00000392004 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.76□□□□□ -0.53
COL6A3-205ENST00000392004 CFAP45Q9UL16 551 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 USP17L5A8MUK1 530 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 TOP1P11387 765 aaKnown RBP11.76□□□□□ -0.53
COL6A3-205ENST00000392004 RAD51AP2Q09MP3 1159 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 PRIMPOLQ96LW4 560 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.76□□□□□ -0.53
COL6A3-205ENST00000392004 FMNL1O95466 1100 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-205ENST00000392004 CRY2Q49AN0 593 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 DACT2Q5SW24 774 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 CYB5R4Q7L1T6 521 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 CHURC1Q8WUH1 139 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 CCDC17Q96LX7 622 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 PIGSQ96S52 555 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 ZHX1Q9UKY1 873 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-205ENST00000392004 CNPY2Q9Y2B0 182 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 SOCS7O14512 581 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 BMP3P12645 472 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 SYT1P21579 422 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 AFMP43652 599 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 APOBEC3FQ8IUX4 373 aaKnown RBP11.75□□□□□ -0.53
COL6A3-205ENST00000392004 SMCO2A6NFE2 343 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 NFKBIEO00221 500 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 GRIPAP1Q4V328 841 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 HSP90AA4PQ58FG1 418 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 PRDM4Q9UKN5 801 aa11.75□□□□□ -0.53
COL6A3-205ENST00000392004 SPDYE2BA6NHP3 402 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 SPDYE6P0CI01 402 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 TXKP42681 527 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 FMR1Q06787 632 aaKnown RBP eCLIP11.74□□□□□ -0.53
COL6A3-205ENST00000392004 TTBK2Q6IQ55 1244 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 APOA5Q6Q788 366 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 CCDC148Q8NFR7 591 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 MYRIPQ8NFW9 859 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 EPB41L4AQ9HCS5 686 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-205ENST00000392004 ZNF541Q9H0D2 1346 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 F5H6K3 240 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 PLEKHA8P1O95397 391 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 LARGE1O95461 756 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 MRPL12P52815 198 aaKnown RBP11.74□□□□□ -0.53
COL6A3-205ENST00000392004 KLRC3Q07444 240 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 TMEM47Q9BQJ4 181 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 RAVER2Q9HCJ3 691 aaKnown RBP11.74□□□□□ -0.53
COL6A3-205ENST00000392004 ADARB2Q9NS39 739 aaKnown RBP11.74□□□□□ -0.53
COL6A3-205ENST00000392004 MRC1P22897 1456 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 YDJCA8MPS7 323 aa11.74□□□□□ -0.53
COL6A3-205ENST00000392004 EGFRP00533 1210 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 PPP4R3BQ5MIZ7 849 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 AGBL3Q8NEM8 1001 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 DDX4Q9NQI0 724 aaKnown RBP11.73□□□□□ -0.53
COL6A3-205ENST00000392004 FBXO28Q9NVF7 368 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 VWA3AA6NCI4 1184 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 YBX3P16989 372 aaKnown RBP eCLIP11.73□□□□□ -0.53
COL6A3-205ENST00000392004 ECE1P42892 770 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 FAM47CQ5HY64 1035 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 FSIP1Q8NA03 581 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 ACER1Q8TDN7 264 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 SENP2Q9HC62 589 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 TCP11L1Q9NUJ3 509 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 BTBD18B2RXH4 712 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 USP17L10C9JJH3 530 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 CCNT1O60563 726 aaKnown RBP11.73□□□□□ -0.53
COL6A3-205ENST00000392004 GNA11P29992 359 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 PDIA3P30101 505 aaKnown RBP11.73□□□□□ -0.53
COL6A3-205ENST00000392004 TMEM266Q2M3C6 531 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 UVSSAQ2YD98 709 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 FBXO11Q86XK2 927 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 CDAN1Q8IWY9 1227 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 STAMQ92783 540 aa11.73□□□□□ -0.53
COL6A3-205ENST00000392004 HOOK1Q9UJC3 728 aaKnown RBP11.73□□□□□ -0.53
COL6A3-205ENST00000392004 NOLC1Q14978 699 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL6A3-205ENST00000392004 C12orf60Q5U649 245 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 KRT40Q6A162 431 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 STOX1Q6ZVD7 989 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 PNMA8AQ86V59 439 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-205ENST00000392004 SCRN1Q12765 414 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 NECTIN1Q15223 517 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 VGLL2Q8N8G2 317 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 CNKSR2Q8WXI2 1034 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 TNMDQ9H2S6 317 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 PSTPIP2Q9H939 334 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 SERPINA10Q9UK55 444 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 MYO9BQ13459 2157 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 AK9Q5TCS8 1911 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 KRT2P35908 639 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 TPM4P67936 248 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 CBX1P83916 185 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 INF2Q27J81 1249 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 TMEM179Q6ZVK1 233 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 RASGRP2Q7LDG7 609 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 ENAHQ8N8S7 591 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-205ENST00000392004 ZDHHC9Q9Y397 364 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 ZNF609O15014 1411 aa11.72□□□□□ -0.53
COL6A3-205ENST00000392004 EP400Q96L91 3159 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 LETM1O95202 739 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-205ENST00000392004 EIF2AK2P19525 551 aaKnown RBP11.71□□□□□ -0.53
COL6A3-205ENST00000392004 UBE2SQ16763 222 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms