RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CABP5Q9NP86 173 aa28.97■■■□□ 2.23
SHOX2-201ENST00000389589 SERPINA10Q9UK55 444 aa28.97■■■□□ 2.23
SHOX2-201ENST00000389589 FAM237AA0A1B0GTK4 181 aa28.96■■■□□ 2.23
SHOX2-201ENST00000389589 C21orf2O43822 256 aa28.96■■■□□ 2.23
SHOX2-201ENST00000389589 PFKFB1P16118 471 aa28.96■■■□□ 2.23
SHOX2-201ENST00000389589 RTKN2Q8IZC4 609 aa28.96■■■□□ 2.23
SHOX2-201ENST00000389589 STAG2Q8N3U4 1231 aa28.96■■■□□ 2.23
SHOX2-201ENST00000389589 CEP95Q96GE4 821 aa28.96■■■□□ 2.23
SHOX2-201ENST00000389589 SDF4Q9BRK5 362 aa28.96■■■□□ 2.23
SHOX2-201ENST00000389589 ANO6Q4KMQ2 910 aa28.95■■■□□ 2.23
SHOX2-201ENST00000389589 CCDC93Q567U6 631 aa28.95■■■□□ 2.23
SHOX2-201ENST00000389589 FAM43AQ8N2R8 423 aa28.95■■■□□ 2.23
SHOX2-201ENST00000389589 NOL7Q9UMY1 257 aaKnown RBP28.95■■■□□ 2.23
SHOX2-201ENST00000389589 PPIP5K2O43314 1243 aa28.95■■■□□ 2.22
SHOX2-201ENST00000389589 CALML3P27482 149 aa28.95■■■□□ 2.22
SHOX2-201ENST00000389589 HS1BP3Q53T59 392 aa28.95■■■□□ 2.22
SHOX2-201ENST00000389589 FAM177A1Q8N128 213 aaPredicted RBP28.95■■■□□ 2.22
SHOX2-201ENST00000389589 TIGD1Q96MW7 591 aa28.95■■■□□ 2.22
SHOX2-201ENST00000389589 EHD4Q9H223 541 aa28.95■■■□□ 2.22
SHOX2-201ENST00000389589 ZNF202O95125 648 aa28.94■■■□□ 2.22
SHOX2-201ENST00000389589 NLRP5P59047 1200 aa28.94■■■□□ 2.22
SHOX2-201ENST00000389589 RESP18Q5W5W9 173 aa28.94■■■□□ 2.22
SHOX2-201ENST00000389589 HPSEQ9Y251 543 aa28.94■■■□□ 2.22
SHOX2-201ENST00000389589 NPM3O75607 178 aaKnown RBP28.93■■■□□ 2.22
SHOX2-201ENST00000389589 NPY5RQ15761 445 aa28.93■■■□□ 2.22
SHOX2-201ENST00000389589 TNFRSF25Q93038 417 aa28.93■■■□□ 2.22
SHOX2-201ENST00000389589 SMARCA1P28370 1054 aa28.93■■■□□ 2.22
SHOX2-201ENST00000389589 STX1AQ16623 288 aa28.93■■■□□ 2.22
SHOX2-201ENST00000389589 SHC4Q6S5L8 630 aa28.93■■■□□ 2.22
SHOX2-201ENST00000389589 PSMD1Q99460 953 aa28.93■■■□□ 2.22
SHOX2-201ENST00000389589 IDI2Q9BXS1 227 aa28.93■■■□□ 2.22
SHOX2-201ENST00000389589 DHX36Q9H2U1 1008 aaKnown RBP28.93■■■□□ 2.22
SHOX2-201ENST00000389589 PCDHB6Q9Y5E3 794 aa28.93■■■□□ 2.22
SHOX2-201ENST00000389589 TRIM75PA6NK02 468 aa28.92■■■□□ 2.22
SHOX2-201ENST00000389589 BMP15O95972 392 aa28.92■■■□□ 2.22
SHOX2-201ENST00000389589 PARP1P09874 1014 aaKnown RBP28.92■■■□□ 2.22
SHOX2-201ENST00000389589 RBM5P52756 815 aaKnown RBP eCLIP28.92■■■□□ 2.22
SHOX2-201ENST00000389589 SPZ1Q9BXG8 430 aa28.92■■■□□ 2.22
SHOX2-201ENST00000389589 GREB1LQ9C091 1923 aaPredicted RBP28.92■■■□□ 2.22
SHOX2-201ENST00000389589 PTPREP23469 700 aa28.92■■■□□ 2.22
SHOX2-201ENST00000389589 SYKP43405 635 aa28.92■■■□□ 2.22
SHOX2-201ENST00000389589 MTMR4Q9NYA4 1195 aa28.92■■■□□ 2.22
SHOX2-201ENST00000389589 IGKV6D-41A0A0C4DH26 115 aa28.91■■■□□ 2.22
SHOX2-201ENST00000389589 KLRF2D3W0D1 207 aa28.9■■■□□ 2.22
SHOX2-201ENST00000389589 NFIAQ12857 509 aa28.9■■■□□ 2.22
SHOX2-201ENST00000389589 ZNF579Q8NAF0 562 aaKnown RBP28.9■■■□□ 2.22
SHOX2-201ENST00000389589 USP25Q9UHP3 1055 aa28.9■■■□□ 2.22
SHOX2-201ENST00000389589 PPP4R3BQ5MIZ7 849 aa28.9■■■□□ 2.22
SHOX2-201ENST00000389589 CCDC148Q8NFR7 591 aa28.9■■■□□ 2.22
SHOX2-201ENST00000389589 PIBF1Q8WXW3 757 aa28.9■■■□□ 2.22
SHOX2-201ENST00000389589 CLIC6Q96NY7 704 aa28.9■■■□□ 2.22
SHOX2-201ENST00000389589 CBX8Q9HC52 389 aa28.9■■■□□ 2.22
SHOX2-201ENST00000389589 FBXO2Q9UK22 296 aaPredicted RBP28.9■■■□□ 2.22
SHOX2-201ENST00000389589 AKR1B1P15121 316 aa28.89■■■□□ 2.22
SHOX2-201ENST00000389589 SHMT1P34896 483 aa28.89■■■□□ 2.22
SHOX2-201ENST00000389589 TRAPPC10P48553 1259 aa28.89■■■□□ 2.22
SHOX2-201ENST00000389589 GALNT17Q6IS24 598 aa28.89■■■□□ 2.22
SHOX2-201ENST00000389589 ANO10Q9NW15 660 aa28.89■■■□□ 2.22
SHOX2-201ENST00000389589 SRPRBQ9Y5M8 271 aaKnown RBP28.89■■■□□ 2.22
SHOX2-201ENST00000389589 SIPA1L1O43166 1804 aa28.89■■■□□ 2.22
SHOX2-201ENST00000389589 DPEP1P16444 411 aa28.89■■■□□ 2.21
SHOX2-201ENST00000389589 ZNF165P49910 485 aa28.89■■■□□ 2.21
SHOX2-201ENST00000389589 VPS33BQ9H267 617 aa28.89■■■□□ 2.21
SHOX2-201ENST00000389589 MTMR7Q9Y216 660 aa28.89■■■□□ 2.21
SHOX2-201ENST00000389589 YDJCA8MPS7 323 aa28.88■■■□□ 2.21
SHOX2-201ENST00000389589 CYTH3O43739 400 aa28.88■■■□□ 2.21
SHOX2-201ENST00000389589 CCDC17Q96LX7 622 aa28.88■■■□□ 2.21
SHOX2-201ENST00000389589 DNAJC25Q9H1X3 360 aa28.88■■■□□ 2.21
SHOX2-201ENST00000389589 KIAA1468Q9P260 1216 aa28.88■■■□□ 2.21
SHOX2-201ENST00000389589 MYH4Q9Y623 1939 aa28.88■■■□□ 2.21
SHOX2-201ENST00000389589 ATP2B1P20020 1258 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 KCNA3P22001 575 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 EARS2Q5JPH6 523 aaKnown RBP28.87■■■□□ 2.21
SHOX2-201ENST00000389589 CCDC125Q86Z20 511 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 FAM13BQ9NYF5 915 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 FAM205CA6NFA0 338 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 TTLL1O95922 423 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 SLC35G1Q2M3R5 365 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 BLIDQ8IZY5 108 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 PCDHA4Q9UN74 947 aa28.87■■■□□ 2.21
SHOX2-201ENST00000389589 VEGFAP15692 232 aaPredicted RBP28.86■■■□□ 2.21
SHOX2-201ENST00000389589 SOGA3Q5TF21 947 aa28.86■■■□□ 2.21
SHOX2-201ENST00000389589 BARHL2Q9NY43 387 aa28.86■■■□□ 2.21
SHOX2-201ENST00000389589 PI4KBQ9UBF8 816 aa28.86■■■□□ 2.21
SHOX2-201ENST00000389589 KCNH3Q9ULD8 1083 aa28.86■■■□□ 2.21
SHOX2-201ENST00000389589 ADCY5O95622 1261 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 GOLGA8HP0CJ92 632 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 DAGLBQ8NCG7 672 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 GPKOWQ92917 476 aaPredicted RBP eCLIP28.85■■■□□ 2.21
SHOX2-201ENST00000389589 CCDC39Q9UFE4 941 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 FAM198AQ9UFP1 575 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 ZRSR1Q15695 479 aaKnown RBP28.85■■■□□ 2.21
SHOX2-201ENST00000389589 ASPRV1Q53RT3 343 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 TTC38Q5R3I4 469 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 USP17L2Q6R6M4 530 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 LUZP1Q86V48 1076 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 PCDHAC2Q9Y5I4 1007 aa28.85■■■□□ 2.21
SHOX2-201ENST00000389589 ESPNB1AK53 854 aa28.84■■■□□ 2.21
SHOX2-201ENST00000389589 WWC2Q6AWC2 1192 aa28.84■■■□□ 2.21
SHOX2-201ENST00000389589 ZFPM1Q8IX07 1006 aa28.84■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms