RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 SLC27A3Q5K4L6 730 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 LRRC47Q8N1G4 583 aaKnown RBP12.36□□□□□ -0.43
NEDD9-201ENST00000379433 RASSF8Q8NHQ8 419 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 POLR2DO15514 142 aaKnown RBP12.36□□□□□ -0.43
NEDD9-201ENST00000379433 TPD52L2O43399 206 aaKnown RBP12.36□□□□□ -0.43
NEDD9-201ENST00000379433 ADRA2BP18089 450 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 ATP2B4P23634 1241 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 TROAPQ12815 778 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 LRMPQ12912 555 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 CNNM3Q8NE01 707 aa12.36□□□□□ -0.43
NEDD9-201ENST00000379433 SEMA3EO15041 775 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 BBOX1O75936 387 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 XBP1P17861 261 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 LMOD1P29536 600 aaPredicted RBP12.35□□□□□ -0.43
NEDD9-201ENST00000379433 KIAA2012Q0VF49 1180 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 SHC4Q6S5L8 630 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 C2CD5Q86YS7 1000 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 WASF1Q92558 559 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 IL17RBQ9NRM6 502 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 ARPP21Q9UBL0 812 aaPredicted RBP12.35□□□□□ -0.43
NEDD9-201ENST00000379433 SMC2O95347 1197 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 TOB1P50616 345 aaPredicted RBP12.35□□□□□ -0.43
NEDD9-201ENST00000379433 SLC39A14Q15043 492 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 LONRF3Q496Y0 759 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 CCDC186Q7Z3E2 898 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 FMR1NBQ8N0W7 255 aaPredicted RBP12.35□□□□□ -0.43
NEDD9-201ENST00000379433 NLGN1Q8N2Q7 840 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 SHISA4Q96DD7 197 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 PDLIM2Q96JY6 352 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 EYA3Q99504 573 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 POLR3EQ9NVU0 708 aa12.35□□□□□ -0.43
NEDD9-201ENST00000379433 CICQ96RK0 1608 aaPredicted RBP12.34□□□□□ -0.43
NEDD9-201ENST00000379433 VWA3AA6NCI4 1184 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 LDHCP07864 332 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 ARID5BQ14865 1188 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 C12orf60Q5U649 245 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 KLHL10Q6JEL2 608 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 SCP2P22307 547 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 CCDC181Q5TID7 509 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 FBXL16Q8N461 479 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 DHX58Q96C10 678 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 EPSTI1Q96J88 318 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 CLCN1P35523 988 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 GSTO1P78417 241 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 SHROOM1Q2M3G4 852 aaPredicted RBP12.34□□□□□ -0.43
NEDD9-201ENST00000379433 USP40Q9NVE5 1235 aa12.34□□□□□ -0.43
NEDD9-201ENST00000379433 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.34□□□□□ -0.43
NEDD9-201ENST00000379433 KIF4AO95239 1232 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 SRGNP10124 158 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 STX1AQ16623 288 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 NME8Q8N427 588 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 CERS5Q8N5B7 392 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 JMYQ8N9B5 988 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 ENGASEQ8NFI3 743 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 YY1AP1Q9H869 796 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 GPCPD1Q9NPB8 672 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 KCNH3Q9ULD8 1083 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 ZKSCAN5Q9Y2L8 839 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 WDR19Q8NEZ3 1342 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 C21orf2O43822 256 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 YEATS4O95619 227 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 CDK8P49336 464 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 NFIAQ12857 509 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 DHX8Q14562 1220 aaKnown RBP12.33□□□□□ -0.44
NEDD9-201ENST00000379433 PKN1Q16512 942 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 CRY2Q49AN0 593 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 CEP57L1Q8IYX8 460 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 RTFDC1Q9BY42 306 aaPredicted RBP12.33□□□□□ -0.44
NEDD9-201ENST00000379433 CLIP2Q9UDT6 1046 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 C4BP0C0L5 1744 aa12.33□□□□□ -0.44
NEDD9-201ENST00000379433 KRT2P35908 639 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 AOC3Q16853 763 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 DAGLAQ9Y4D2 1042 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 FLT1P17948 1338 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 RCSD1Q6JBY9 416 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 KRI1Q8N9T8 703 aaKnown RBP12.32□□□□□ -0.44
NEDD9-201ENST00000379433 PROCA1Q8NCQ7 364 aaPredicted RBP12.32□□□□□ -0.44
NEDD9-201ENST00000379433 CEP95Q96GE4 821 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 CSRNP2Q9H175 543 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 BRMS1Q9HCU9 246 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 KIAA1468Q9P260 1216 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 TNRC6CQ9HCJ0 1690 aaKnown RBP12.32□□□□□ -0.44
NEDD9-201ENST00000379433 TMTC3Q6ZXV5 915 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 ZFPM1Q8IX07 1006 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 TRMT44Q8IYL2 757 aaKnown RBP12.32□□□□□ -0.44
NEDD9-201ENST00000379433 TMEM47Q9BQJ4 181 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 ANO10Q9NW15 660 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 SERTAD1Q9UHV2 236 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 NOL7Q9UMY1 257 aaKnown RBP12.32□□□□□ -0.44
NEDD9-201ENST00000379433 PPME1Q9Y570 386 aa12.32□□□□□ -0.44
NEDD9-201ENST00000379433 COL5A3P25940 1745 aaPredicted RBP12.31□□□□□ -0.44
NEDD9-201ENST00000379433 SLC16A2P36021 539 aa12.31□□□□□ -0.44
NEDD9-201ENST00000379433 ZNF772Q68DY9 489 aaPredicted RBP12.31□□□□□ -0.44
NEDD9-201ENST00000379433 DDX4Q9NQI0 724 aaKnown RBP12.31□□□□□ -0.44
NEDD9-201ENST00000379433 ANAPC4Q9UJX5 808 aa12.31□□□□□ -0.44
NEDD9-201ENST00000379433 TRIM75PA6NK02 468 aa12.31□□□□□ -0.44
NEDD9-201ENST00000379433 H0YIN7 160 aa12.31□□□□□ -0.44
NEDD9-201ENST00000379433 U2AF2P26368 475 aaKnown RBP eCLIP12.31□□□□□ -0.444e-7■■■□□ 14.8
NEDD9-201ENST00000379433 SMYD4Q8IYR2 804 aaPredicted RBP12.31□□□□□ -0.44
NEDD9-201ENST00000379433 MAPK8IP1Q9UQF2 711 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms