RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 MED10Q9BTT4 135 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 RABEP2Q9H5N1 569 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 STK38LQ9Y2H1 464 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 GJA3Q9Y6H8 435 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 TNNI1P19237 187 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 HERC4Q5GLZ8 1057 aaPredicted RBP11.69□□□□□ -0.54
RTN3-206ENST00000377819 SCYL2Q6P3W7 929 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 BRAPQ7Z569 592 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 ANKRD42Q8N9B4 389 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 IFNKQ9P0W0 207 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 DMRT2Q9Y5R5 561 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 PSDA5PKW4 1024 aaPredicted RBP11.69□□□□□ -0.54
RTN3-206ENST00000377819 ZBED4O75132 1171 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 HSPA6P17066 643 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 PDE6BP35913 854 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 PDE1BQ01064 536 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 RAB3GAP1Q15042 981 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 CSRNP1Q96S65 589 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 PLIN2Q99541 437 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 MYCLP12524 364 aaPredicted RBP11.68□□□□□ -0.54
RTN3-206ENST00000377819 IL15P40933 162 aaPredicted RBP11.68□□□□□ -0.54
RTN3-206ENST00000377819 KLHDC4Q8TBB5 520 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 ARHGEF1Q92888 912 aaKnown RBP11.68□□□□□ -0.54
RTN3-206ENST00000377819 DACH2Q96NX9 599 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 WWC3Q9ULE0 1092 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 DEPDC5O75140 1603 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 ZBBXA8MT70 800 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 ARHGEF9O43307 516 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 SAT1P21673 171 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 EEF1B2P24534 225 aaKnown RBP11.68□□□□□ -0.54
RTN3-206ENST00000377819 EEF1DP29692 281 aaKnown RBP11.68□□□□□ -0.54
RTN3-206ENST00000377819 ECE1P42892 770 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 KRT33BQ14525 404 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 CFAP221Q4G0U5 840 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 MCMDC2Q4G0Z9 681 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 ZBTB41Q5SVQ8 909 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 ABI1Q8IZP0 508 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 RYBPQ8N488 228 aaPredicted RBP11.68□□□□□ -0.54
RTN3-206ENST00000377819 NECAB1Q8N987 351 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 ENOX1Q8TC92 643 aaKnown RBP11.68□□□□□ -0.54
RTN3-206ENST00000377819 TFCP2L1Q9NZI6 479 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 MAP3K2Q9Y2U5 619 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 STK25O00506 426 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 FOXO3O43524 673 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 MAP2K2P36507 400 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 CSGALNACT2Q8N6G5 542 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 PRKAG2Q9UGJ0 569 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 SNX1Q13596 522 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 KRT80Q6KB66 452 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 NUDCD3Q8IVD9 361 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 FBXL13Q8NEE6 735 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 NUDT16Q96DE0 195 aaKnown RBP11.68□□□□□ -0.54
RTN3-206ENST00000377819 LRRC2Q9BYS8 371 aa11.68□□□□□ -0.54
RTN3-206ENST00000377819 PTPRKQ15262 1439 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 RAD50Q92878 1312 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 MAN1A2O60476 641 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 KLHL30Q0D2K2 578 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 TTC22Q5TAA0 569 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 KLHL7Q8IXQ5 586 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 N4BP2L2Q92802 583 aaPredicted RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 SECISBP2LQ93073 1101 aaKnown RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 CPSF3Q9UKF6 684 aaKnown RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 LRRD1A4D1F6 860 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 SMCO2A6NFE2 343 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 GSTA4O15217 222 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 ZC3H15Q8WU90 426 aaKnown RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 TTC25Q96NG3 672 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 DNM3Q9UQ16 869 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 MAFGO15525 162 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 C16orf72Q14CZ0 275 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 MAP7D3Q8IWC1 876 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 IGSF22Q8N9C0 903 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 UBN1Q9NPG3 1134 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 TXLNGQ9NUQ3 528 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 POLR1AO95602 1720 aaPredicted RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 PTPRCP08575 1304 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 PTPDC1A2A3K4 754 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 EIF3DO15371 548 aaKnown RBP eCLIP11.67□□□□□ -0.54
RTN3-206ENST00000377819 PTPREP23469 700 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 KPNA2P52292 529 aaKnown RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 RAD51AP2Q09MP3 1159 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 PRPSAP1Q14558 356 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 GLE1Q53GS7 698 aaKnown RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 KRBA2Q6ZNG9 492 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 ZBTB9Q96C00 473 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 ANKRD2Q9GZV1 360 aa11.67□□□□□ -0.54
RTN3-206ENST00000377819 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.67□□□□□ -0.54
RTN3-206ENST00000377819 CHCHD3Q9NX63 227 aaKnown RBP11.67□□□□□ -0.54
RTN3-206ENST00000377819 NIP7Q9Y221 180 aaKnown RBP eCLIP11.67□□□□□ -0.54
RTN3-206ENST00000377819 PI4KAP2A4QPH2 592 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 HLA-DPA1P20036 260 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 EIF6P56537 245 aaKnown RBP11.66□□□□□ -0.54
RTN3-206ENST00000377819 TRIM68Q6AZZ1 485 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 ZBTB8OSQ8IWT0 167 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 NME8Q8N427 588 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 PI4KAP1Q8N8J0 262 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 GIPC2Q8TF65 315 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 RAB20Q9NX57 234 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 SCOCQ9UIL1 159 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms