RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 AFAP1L2Q8N4X5 818 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 DPH5Q9H2P9 285 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 BAIAP2L1Q9UHR4 511 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 PDE8AO60658 829 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 KRT71Q3SY84 523 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 BRDTQ58F21 947 aaPredicted RBP15.16■□□□□ 0.02
COL4A1-201ENST00000375820 ZNF790Q6PG37 636 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 PALM2Q8IXS6 379 aa15.16■□□□□ 0.02
COL4A1-201ENST00000375820 RRAGDQ9NQL2 400 aaPredicted RBP15.16■□□□□ 0.02
COL4A1-201ENST00000375820 DENND4BO75064 1496 aaPredicted RBP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 PTPN21Q16825 1174 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 PLBD2Q8NHP8 589 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 APPBP2Q92624 585 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 METTL22Q9BUU2 404 aaPredicted RBP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 IFIH1Q9BYX4 1025 aaKnown RBP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 ATF7P17544 494 aaPredicted RBP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 CNGA1P29973 690 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 THRAP3Q9Y2W1 955 aaKnown RBP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 RAD50Q92878 1312 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 M0QZ92 97 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 BCRP11274 1271 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 SCYL1Q96KG9 808 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 KRT12Q99456 494 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 DDX41Q9UJV9 622 aaKnown RBP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 ZBTB7BO15156 539 aaPredicted RBP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 BAG2O95816 211 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 IGBP1P78318 339 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 RSPH3Q86UC2 560 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 ABCC1P33527 1531 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 DNM2P50570 870 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 IL1RL1Q01638 556 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 SKA2Q8WVK7 121 aaPredicted RBP15.15■□□□□ 0.02
COL4A1-201ENST00000375820 TRPC6Q9Y210 931 aa15.15■□□□□ 0.02
COL4A1-201ENST00000375820 VGLL3A8MV65 326 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 KCNK3O14649 394 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 SMCR8Q8TEV9 937 aaPredicted RBP15.14■□□□□ 0.01
COL4A1-201ENST00000375820 RPS6KA2Q15349 733 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 ZNF827Q17R98 1081 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 GIGYF1O75420 1035 aaPredicted RBP15.14■□□□□ 0.01
COL4A1-201ENST00000375820 SCNN1DP51172 638 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 FOXD4Q12950 439 aaPredicted RBP15.14■□□□□ 0.01
COL4A1-201ENST00000375820 LRRC47Q8N1G4 583 aaKnown RBP15.14■□□□□ 0.01
COL4A1-201ENST00000375820 PRPF31Q8WWY3 499 aaKnown RBP15.14■□□□□ 0.01
COL4A1-201ENST00000375820 TCP10L2B9ZVM9 353 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 PRR16Q569H4 304 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 GPBP1Q86WP2 473 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 EFCC1Q9HA90 598 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 SMCO2A6NFE2 343 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 NAA35Q5VZE5 725 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 CCDC13Q8IYE1 715 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 GPKOWQ92917 476 aaPredicted RBP eCLIP15.14■□□□□ 0.01
COL4A1-201ENST00000375820 ANKFY1Q9P2R3 1169 aa15.14■□□□□ 0.01
COL4A1-201ENST00000375820 SH3TC1Q8TE82 1336 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 H0YIN7 160 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 DLATP10515 647 aaKnown RBP15.13■□□□□ 0.01
COL4A1-201ENST00000375820 ADCY1Q08828 1119 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 CFAP221Q4G0U5 840 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 USP19O94966 1318 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 RPRD2Q5VT52 1461 aaKnown RBP15.13■□□□□ 0.01
COL4A1-201ENST00000375820 WDR46O15213 610 aaKnown RBP15.13■□□□□ 0.01
COL4A1-201ENST00000375820 CASP2P42575 452 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 SDR42E1Q8WUS8 393 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 APOL6Q9BWW8 343 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.13■□□□□ 0.01
COL4A1-201ENST00000375820 RIMS2Q9UQ26 1411 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 KDM5BQ9UGL1 1544 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 TUBB4BP68371 445 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 GTF2IP78347 998 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 ARHGEF16Q5VV41 709 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 NUP58Q9BVL2 599 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 XPO4Q9C0E2 1151 aaKnown RBP15.13■□□□□ 0.01
COL4A1-201ENST00000375820 STK32BQ9NY57 414 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 KIAA0586Q9BVV6 1533 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 GAS7O60861 476 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 STX2P32856 288 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 MIER3Q7Z3K6 550 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 SMYD2Q9NRG4 433 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 USP40Q9NVE5 1235 aa15.13■□□□□ 0.01
COL4A1-201ENST00000375820 KIF22Q14807 665 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 ANKRD20A3Q5VUR7 823 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 DEPTORQ8TB45 409 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 POMGNT1Q8WZA1 660 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 CPSF2Q9P2I0 782 aaKnown RBP15.12■□□□□ 0.01
COL4A1-201ENST00000375820 RABGAP1Q9Y3P9 1069 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 KDRP35968 1356 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 FLOT1O75955 427 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 CTNNA1P35221 906 aaKnown RBP15.12■□□□□ 0.01
COL4A1-201ENST00000375820 ADCY8P40145 1251 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 PAK2Q13177 524 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 DOK7Q18PE1 504 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 SLC4A1P02730 911 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 ALAS1P13196 640 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 RBBP5Q15291 538 aaKnown RBP15.12■□□□□ 0.01
COL4A1-201ENST00000375820 KRT25Q7Z3Z0 450 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 TRIM35Q9UPQ4 493 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 PTPN22Q9Y2R2 807 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 E7EWF7 191 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 CAPN9O14815 690 aa15.12■□□□□ 0.01
COL4A1-201ENST00000375820 SUGCTQ9HAC7 445 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms