RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 RPS8P62241 208 aaKnown RBP9.56□□□□□ -0.88
SYNE1-206ENST00000367253 IRAK1BP1Q5VVH5 260 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 CCDC50Q8IVM0 306 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 FAM210AQ96ND0 272 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 VCX3BQ9H321 246 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 PIK3R4Q99570 1358 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 ZFYVE9O95405 1425 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 STX10O60499 249 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 TUBBP07437 444 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 PTPREP23469 700 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 TPD52P55327 224 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-206ENST00000367253 NEDD9Q14511 834 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 NANOGNBQ7Z5D8 188 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-206ENST00000367253 PARK7Q99497 189 aaKnown RBP9.56□□□□□ -0.88
SYNE1-206ENST00000367253 FAM8A1Q9UBU6 413 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 MTUS1Q9ULD2 1270 aa9.56□□□□□ -0.88
SYNE1-206ENST00000367253 TFDP1Q14186 410 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 TMEM67Q5HYA8 995 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 PIAS4Q8N2W9 510 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-206ENST00000367253 TBC1D31Q96DN5 1066 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 SLC7A5P2Q9GIP4 190 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 VPS18Q9P253 973 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 MKRN1Q9UHC7 482 aaKnown RBP9.55□□□□□ -0.88
SYNE1-206ENST00000367253 ABCC11Q96J66 1382 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 GOLGA8CPA6NN73 597 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 BUB1BO60566 1050 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-206ENST00000367253 ALDH1L1O75891 902 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 GABPAQ06546 454 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 KIAA0753Q2KHM9 967 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 B4GALNT4Q76KP1 1039 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 STMN2Q93045 179 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 SKA1Q96BD8 255 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 ADAMTS8Q9UP79 889 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 ANKRD36BQ8N2N9 1353 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 NLRP1Q9C000 1473 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 SLC1A4P43007 532 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 PCYT1AP49585 367 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 FAPQ12884 760 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 SDE2Q6IQ49 451 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.55□□□□□ -0.88
SYNE1-206ENST00000367253 VCXQ9H320 206 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 FAF1Q9UNN5 650 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-206ENST00000367253 DIP2CQ9Y2E4 1556 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 FCGRTP55899 365 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 DPYDQ12882 1025 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 BIRC3Q13489 604 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 WTAPQ15007 396 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 XAGE3Q8WTP9 111 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 JAKMIP1Q96N16 626 aaKnown RBP9.55□□□□□ -0.88
SYNE1-206ENST00000367253 SERTAD1Q9UHV2 236 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 NPC1L1Q9UHC9 1359 aa9.55□□□□□ -0.88
SYNE1-206ENST00000367253 NNMTP40261 264 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 CCDC15Q0P6D6 951 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 ZYXQ15942 572 aaKnown RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 URGCPQ8TCY9 931 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 SAMD15Q9P1V8 674 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 TNNQ9UQP3 1299 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 MAP3K2Q9Y2U5 619 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 KIF1BO60333 1816 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 HNRNPCP07910 306 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 ZFXP17010 805 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 PSMD7P51665 324 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 TSNAXIP1Q2TAA8 658 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 WDR44Q5JSH3 913 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 FERMT3Q86UX7 667 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 NDUFAF2Q8N183 169 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 ARRDC4Q8NCT1 418 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 AKAP7Q9P0M2 348 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 RABL2AQ9UBK7 228 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 MRPL11Q9Y3B7 192 aaKnown RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 KIDINS220Q9ULH0 1771 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 ZW10O43264 779 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 PARP1P09874 1014 aaKnown RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 U2AF2P26368 475 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 INPP5BP32019 993 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 COG7P83436 770 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 ATP11AP98196 1134 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 STX1AQ16623 288 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 ACBD5Q5T8D3 534 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 CCDC80Q76M96 950 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 NACC1Q96RE7 527 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 TACO1Q9BSH4 297 aaKnown RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 SPZ1Q9BXG8 430 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 USP40Q9NVE5 1235 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 ZKSCAN5Q9Y2L8 839 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 FARP1Q9Y4F1 1045 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 ZNF165P49910 485 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 GTF2IP78347 998 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 EXOSC9Q06265 439 aaKnown RBP9.54□□□□□ -0.88
SYNE1-206ENST00000367253 CCDC38Q502W7 563 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 CDHR1Q96JP9 859 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 RTL9Q8NET4 1388 aa9.54□□□□□ -0.88
SYNE1-206ENST00000367253 FOXD4Q12950 439 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 IFI16Q16666 785 aaKnown RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 CCDC144BQ3MJ40 725 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 KRT79Q5XKE5 535 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 GRAMD4Q6IC98 578 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms