RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ADORA2AP29274 412 aa16.85■□□□□ 0.29
VPS29-201ENST00000360579 SMAD3P84022 425 aaKnown RBP16.85■□□□□ 0.29
VPS29-201ENST00000360579 MAP3K12Q12852 859 aa16.85■□□□□ 0.29
VPS29-201ENST00000360579 SNX17Q15036 470 aa16.85■□□□□ 0.29
VPS29-201ENST00000360579 SHHQ15465 462 aa16.85■□□□□ 0.29
VPS29-201ENST00000360579 MAGEB6Q8N7X4 407 aa16.85■□□□□ 0.29
VPS29-201ENST00000360579 MB21D1Q8N884 522 aa16.85■□□□□ 0.29
VPS29-201ENST00000360579 MAFAQ8NHW3 353 aaPredicted RBP16.85■□□□□ 0.29
VPS29-201ENST00000360579 FRAT1Q92837 279 aaPredicted RBP16.85■□□□□ 0.29
VPS29-201ENST00000360579 SEMA6BQ9H3T3 888 aa16.85■□□□□ 0.29
VPS29-201ENST00000360579 DBNLQ9UJU6 430 aaKnown RBP16.85■□□□□ 0.29
VPS29-201ENST00000360579 CDH23Q9H251 3354 aa16.85■□□□□ 0.29
VPS29-201ENST00000360579 SHMT1P34896 483 aa16.84■□□□□ 0.29
VPS29-201ENST00000360579 ATP8B2P98198 1209 aa16.84■□□□□ 0.29
VPS29-201ENST00000360579 C1orf53Q5VUE5 145 aa16.84■□□□□ 0.29
VPS29-201ENST00000360579 MOV10L1Q9BXT6 1211 aaKnown RBP16.84■□□□□ 0.29
VPS29-201ENST00000360579 SPATC1LQ9H0A9 340 aa16.84■□□□□ 0.29
VPS29-201ENST00000360579 ERCC3P19447 782 aa16.83■□□□□ 0.28
VPS29-201ENST00000360579 TRIM60Q495X7 471 aa16.83■□□□□ 0.28
VPS29-201ENST00000360579 C9orf50Q5SZB4 431 aa16.83■□□□□ 0.28
VPS29-201ENST00000360579 ABRAQ8N0Z2 381 aa16.83■□□□□ 0.28
VPS29-201ENST00000360579 BADQ92934 168 aa16.83■□□□□ 0.28
VPS29-201ENST00000360579 CLUAP1Q96AJ1 413 aa16.83■□□□□ 0.28
VPS29-201ENST00000360579 TANGO6Q9C0B7 1094 aa16.83■□□□□ 0.28
VPS29-201ENST00000360579 MROH8Q9H579 483 aa16.83■□□□□ 0.28
VPS29-201ENST00000360579 NOP58Q9Y2X3 529 aaKnown RBP16.83■□□□□ 0.28
VPS29-201ENST00000360579 ZNF236Q9UL36 1845 aa16.82■□□□□ 0.28
VPS29-201ENST00000360579 TMEM265A0A087WTH1 108 aa16.82■□□□□ 0.28
VPS29-201ENST00000360579 POLR3DP05423 398 aaPredicted RBP16.82■□□□□ 0.28
VPS29-201ENST00000360579 PLCD1P51178 756 aa16.82■□□□□ 0.28
VPS29-201ENST00000360579 SEPT2Q15019 361 aa16.82■□□□□ 0.28
VPS29-201ENST00000360579 PDLIM7Q9NR12 457 aa16.82■□□□□ 0.28
VPS29-201ENST00000360579 MYH1P12882 1939 aa16.82■□□□□ 0.28
VPS29-201ENST00000360579 LTBP2Q14767 1821 aa16.82■□□□□ 0.28
VPS29-201ENST00000360579 PRUNE2Q8WUY3 3088 aa16.81■□□□□ 0.28
VPS29-201ENST00000360579 GUCY1A2P33402 732 aa16.81■□□□□ 0.28
VPS29-201ENST00000360579 ADCYAP1R1P41586 468 aa16.81■□□□□ 0.28
VPS29-201ENST00000360579 GABPAQ06546 454 aa16.81■□□□□ 0.28
VPS29-201ENST00000360579 LRRC41Q15345 812 aa16.81■□□□□ 0.28
VPS29-201ENST00000360579 SYMPKQ92797 1274 aaKnown RBP16.81■□□□□ 0.28
VPS29-201ENST00000360579 CCDC8Q9H0W5 538 aaPredicted RBP16.81■□□□□ 0.28
VPS29-201ENST00000360579 TLR7Q9NYK1 1049 aaKnown RBP16.81■□□□□ 0.28
VPS29-201ENST00000360579 NRBP1Q9UHY1 535 aa16.81■□□□□ 0.28
VPS29-201ENST00000360579 TACC3Q9Y6A5 838 aa16.81■□□□□ 0.28
VPS29-201ENST00000360579 MPHOSPH10O00566 681 aaKnown RBP16.8■□□□□ 0.28
VPS29-201ENST00000360579 COBLO75128 1261 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 BCAR3O75815 825 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 FOSL2P15408 326 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 ANO1Q5XXA6 986 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 ZKSCAN2Q63HK3 967 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 TMEM57Q8N5G2 664 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 MYLIPQ8WY64 445 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 EAF2Q96CJ1 260 aaPredicted RBP16.8■□□□□ 0.28
VPS29-201ENST00000360579 RIOK1Q9BRS2 568 aaKnown RBP16.8■□□□□ 0.28
VPS29-201ENST00000360579 CRNKL1Q9BZJ0 848 aaKnown RBP16.8■□□□□ 0.28
VPS29-201ENST00000360579 SH2D4AQ9H788 454 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 TNNQ9UQP3 1299 aa16.8■□□□□ 0.28
VPS29-201ENST00000360579 RLFQ13129 1914 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 MAGEB6P1A0A0J9YX57 407 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 A0A1W2PRG0 241 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 FCER1AP12319 257 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 PLS1Q14651 629 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 TTF1Q15361 905 aaPredicted RBP16.79■□□□□ 0.28
VPS29-201ENST00000360579 TMEM179Q6ZVK1 233 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 NCAPG2Q86XI2 1143 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 MAML3Q96JK9 1138 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 TTYH1Q9H313 450 aaPredicted RBP16.79■□□□□ 0.28
VPS29-201ENST00000360579 PRDM6Q9NQX0 595 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 MCM9Q9NXL9 1143 aa16.79■□□□□ 0.28
VPS29-201ENST00000360579 TRIM43BA6NCK2 446 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 FLOT1O75955 427 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 SLC25A27O95847 323 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 RARBP10826 455 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 TLE2Q04725 743 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 FAM47AQ5JRC9 791 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 RNF180Q86T96 592 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 FERMT2Q96AC1 680 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 TRIM43Q96BQ3 446 aaPredicted RBP16.78■□□□□ 0.28
VPS29-201ENST00000360579 RNPC3Q96LT9 517 aaKnown RBP16.78■□□□□ 0.28
VPS29-201ENST00000360579 ANTXR1Q9H6X2 564 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 ARHGEF10LQ9HCE6 1279 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 XPNPEP3Q9NQH7 507 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 SWAP70Q9UH65 585 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 PHF24Q9UPV7 400 aa16.78■□□□□ 0.28
VPS29-201ENST00000360579 CLTBP09497 229 aa16.77■□□□□ 0.28
VPS29-201ENST00000360579 PRAMEF19Q5SWL8 479 aa16.77■□□□□ 0.28
VPS29-201ENST00000360579 SH3RF1Q7Z6J0 888 aa16.77■□□□□ 0.28
VPS29-201ENST00000360579 ERC1Q8IUD2 1116 aa16.77■□□□□ 0.28
VPS29-201ENST00000360579 MYO5AQ9Y4I1 1855 aaKnown RBP16.77■□□□□ 0.27
VPS29-201ENST00000360579 TTC28Q96AY4 2481 aa16.77■□□□□ 0.27
VPS29-201ENST00000360579 KIAA0355O15063 1070 aa16.76■□□□□ 0.27
VPS29-201ENST00000360579 A0A0G2JMZ2 1700 aa16.76■□□□□ 0.27
VPS29-201ENST00000360579 ROBO3Q96MS0 1386 aa16.76■□□□□ 0.27
VPS29-201ENST00000360579 WDR46O15213 610 aaKnown RBP16.75■□□□□ 0.27
VPS29-201ENST00000360579 RAG1P15918 1043 aa16.75■□□□□ 0.27
VPS29-201ENST00000360579 FPGSQ05932 587 aa16.75■□□□□ 0.27
VPS29-201ENST00000360579 SLC9C2Q5TAH2 1124 aa16.75■□□□□ 0.27
VPS29-201ENST00000360579 AACSQ86V21 672 aa16.75■□□□□ 0.27
VPS29-201ENST00000360579 FTSJ3Q8IY81 847 aaKnown RBP16.75■□□□□ 0.27
VPS29-201ENST00000360579 ATG4CQ96DT6 458 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms