RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 ARHGAP29Q52LW3 1261 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 RNF217Q8TC41 542 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 COL2A1P02458 1487 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 PNMA6AP0CW24 399 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 RPS12P25398 132 aaKnown RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 PLCD1P51178 756 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 PPP2R5AQ15172 486 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 CFAP100Q494V2 611 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 SGMS1Q86VZ5 419 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 ESR2Q92731 530 aa11.59□□□□□ -0.55
SYNE1-203ENST00000354674 GPHNQ9NQX3 736 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 ANGEL1Q9UNK9 670 aaKnown RBP11.59□□□□□ -0.55
SYNE1-203ENST00000354674 C16orf86Q6ZW13 317 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 OSBPL5Q9H0X9 879 aaPredicted RBP11.58□□□□□ -0.56
SYNE1-203ENST00000354674 CXorf56Q9H5V9 222 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 LY9Q9HBG7 655 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 ZBTB12Q9Y330 459 aaPredicted RBP11.58□□□□□ -0.56
SYNE1-203ENST00000354674 FHOD1Q9Y613 1164 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 A0A087WWV3 80 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 SPDYE2BA6NHP3 402 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 SPDYE6P0CI01 402 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 PDIA3P30101 505 aaKnown RBP11.58□□□□□ -0.56
SYNE1-203ENST00000354674 ZNF280AP59817 542 aaPredicted RBP11.58□□□□□ -0.56
SYNE1-203ENST00000354674 PDE4BQ07343 736 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 APOBRQ0VD83 1088 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 PTPN14Q15678 1187 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 CCDC183Q5T5S1 534 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 ISM2Q6H9L7 571 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 AMOTL1Q8IY63 956 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 HDAC9Q9UKV0 1011 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 TAOK2Q9UL54 1235 aa11.58□□□□□ -0.56
SYNE1-203ENST00000354674 GABPAQ06546 454 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 SEC23AQ15436 765 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 CCDC144BQ3MJ40 725 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 AXDND1Q5T1B0 1012 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-203ENST00000354674 CCDC144CPQ8IYA2 1237 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 FAM184AQ8NB25 1140 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 PRMT6Q96LA8 375 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-203ENST00000354674 FAM198AQ9UFP1 575 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 SAP30BPQ9UHR5 308 aaKnown RBP11.57□□□□□ -0.56
SYNE1-203ENST00000354674 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-203ENST00000354674 NID2Q14112 1375 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 SIPA1L1O43166 1804 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 POLR3DP05423 398 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-203ENST00000354674 LMNB1P20700 586 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 OAS2P29728 719 aaKnown RBP11.57□□□□□ -0.56
SYNE1-203ENST00000354674 FAM177A1Q8N128 213 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-203ENST00000354674 GOLGA6L1Q8N7Z2 621 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 NFIAQ12857 509 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 CCDC83Q8IWF9 413 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 NECAB1Q8N987 351 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 DPF2Q92785 391 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 DYNLL2Q96FJ2 89 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 HPS5Q9UPZ3 1129 aa11.57□□□□□ -0.56
SYNE1-203ENST00000354674 ATRNL1Q5VV63 1379 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 YBX3P16989 372 aaKnown RBP eCLIP11.56□□□□□ -0.56
SYNE1-203ENST00000354674 RBM5P52756 815 aaKnown RBP eCLIP11.56□□□□□ -0.56
SYNE1-203ENST00000354674 SCRN1Q12765 414 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 SRLQ86TD4 932 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 EGFL6Q8IUX8 553 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 OGFOD1Q8N543 542 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 EHD4Q9H223 541 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 ENTPD3O75355 529 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 UVSSAQ2YD98 709 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 RRP12Q5JTH9 1297 aaKnown RBP11.56□□□□□ -0.56
SYNE1-203ENST00000354674 ARHGAP27Q6ZUM4 889 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 TTC6Q86TZ1 520 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 TMTC2Q8N394 836 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 LLPHQ9BRT6 129 aaKnown RBP11.56□□□□□ -0.56
SYNE1-203ENST00000354674 SENP2Q9HC62 589 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 TCP11L1Q9NUJ3 509 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 PAXBP1Q9Y5B6 917 aa11.56□□□□□ -0.56
SYNE1-203ENST00000354674 PRDM1O75626 825 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 EIF6P56537 245 aaKnown RBP11.55□□□□□ -0.56
SYNE1-203ENST00000354674 GNL2Q13823 731 aaKnown RBP11.55□□□□□ -0.56
SYNE1-203ENST00000354674 TMEM67Q5HYA8 995 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 FKBP1CQ5VVH2 108 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 METTL16Q86W50 562 aaKnown RBP11.55□□□□□ -0.56
SYNE1-203ENST00000354674 STK11IPQ8N1F8 1099 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 ZSCAN10Q96SZ4 725 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-203ENST00000354674 DHX36Q9H2U1 1008 aaKnown RBP11.55□□□□□ -0.56
SYNE1-203ENST00000354674 TDRD3Q9H7E2 651 aaKnown RBP11.55□□□□□ -0.56
SYNE1-203ENST00000354674 ZNF541Q9H0D2 1346 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 IFIT3O14879 490 aaKnown RBP11.55□□□□□ -0.56
SYNE1-203ENST00000354674 RASA1P20936 1047 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 CDK8P49336 464 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 RCAN1P53805 252 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 PICALMQ13492 652 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 DLGAP5Q15398 846 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 SPDYE2Q495Y8 402 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 ZFPM1Q8IX07 1006 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 CCAR2Q8N163 923 aaKnown RBP11.55□□□□□ -0.56
SYNE1-203ENST00000354674 TXLNBQ8N3L3 684 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 RABEP2Q9H5N1 569 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 ZNF287Q9HBT7 754 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 KLF18A0A0U1RQI7 1052 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 FAM173BQ6P4H8 233 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 APOA5Q6Q788 366 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 SMARCC2Q8TAQ2 1214 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 ANKS1AQ92625 1134 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms