RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 CAPN15O75808 1086 aa8.73□□□□□ -1.01
ZNF540-202ENST00000343599 LDHBP07195 334 aaKnown RBP8.73□□□□□ -1.01
ZNF540-202ENST00000343599 CDK7P50613 346 aa8.73□□□□□ -1.01
ZNF540-202ENST00000343599 TTF1Q15361 905 aaPredicted RBP8.73□□□□□ -1.01
ZNF540-202ENST00000343599 RIMBP2O15034 1052 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 PDE3AQ14432 1141 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 LDHAL6AQ6ZMR3 332 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 CATSPERGQ6ZRH7 1159 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 SLKQ9H2G2 1235 aaPredicted RBP8.72□□□□□ -1.01
ZNF540-202ENST00000343599 R3HDMLQ9H3Y0 253 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 GEMIN8Q9NWZ8 242 aaKnown RBP8.72□□□□□ -1.01
ZNF540-202ENST00000343599 DENND4AQ7Z401 1863 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 LRRFIP1Q32MZ4 808 aaKnown RBP8.72□□□□□ -1.01
ZNF540-202ENST00000343599 FBXO40Q9UH90 709 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 PTPRSQ13332 1948 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 ASTN2O75129 1339 aaPredicted RBP8.72□□□□□ -1.01
ZNF540-202ENST00000343599 KIAA1217Q5T5P2 1943 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 DDX11L8A8MPP1 907 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 ZKSCAN1P17029 563 aaPredicted RBP8.72□□□□□ -1.01
ZNF540-202ENST00000343599 SBK1Q52WX2 424 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 HSP90AB4PQ58FF6 505 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 PHAXQ9H814 394 aaKnown RBP8.72□□□□□ -1.01
ZNF540-202ENST00000343599 ELP3Q9H9T3 547 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 KCNQ5Q9NR82 932 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 PCDHA11Q9Y5I1 949 aa8.72□□□□□ -1.01
ZNF540-202ENST00000343599 TNFRSF10AO00220 468 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 SEPT4O43236 478 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 MCM5P33992 734 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 GABPAQ06546 454 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 SLC4A8Q2Y0W8 1093 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 NAALADL2Q58DX5 795 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 CCSAPQ6IQ19 270 aaPredicted RBP8.71□□□□□ -1.01
ZNF540-202ENST00000343599 GAS2L3Q86XJ1 694 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 WRNIP1Q96S55 665 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 HOXC10Q9NYD6 342 aa8.71□□□□□ -1.01
ZNF540-202ENST00000343599 CBX1P83916 185 aa8.71□□□□□ -1.02
ZNF540-202ENST00000343599 TTLL12Q14166 644 aaPredicted RBP8.71□□□□□ -1.02
ZNF540-202ENST00000343599 ZNF697Q5TEC3 545 aa8.71□□□□□ -1.02
ZNF540-202ENST00000343599 RIOX2Q8IUF8 465 aa8.71□□□□□ -1.02
ZNF540-202ENST00000343599 MKL1Q969V6 931 aa8.71□□□□□ -1.02
ZNF540-202ENST00000343599 SIL1Q9H173 461 aa8.71□□□□□ -1.02
ZNF540-202ENST00000343599 TULP2O00295 520 aa8.7□□□□□ -1.02
ZNF540-202ENST00000343599 WDR46O15213 610 aaKnown RBP8.7□□□□□ -1.02
ZNF540-202ENST00000343599 CNMDO75829 334 aa8.7□□□□□ -1.02
ZNF540-202ENST00000343599 EIF2S2P20042 333 aaKnown RBP8.7□□□□□ -1.02
ZNF540-202ENST00000343599 CTGFP29279 349 aa8.7□□□□□ -1.02
ZNF540-202ENST00000343599 ATP2B3Q16720 1220 aa8.7□□□□□ -1.02
ZNF540-202ENST00000343599 THUMPD2Q9BTF0 503 aaKnown RBP8.7□□□□□ -1.02
ZNF540-202ENST00000343599 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.7□□□□□ -1.02
ZNF540-202ENST00000343599 TMOD4Q9NZQ9 345 aa8.7□□□□□ -1.02
ZNF540-202ENST00000343599 GTF2F1P35269 517 aaKnown RBP eCLIP8.7□□□□□ -1.02
ZNF540-202ENST00000343599 UBE3BQ7Z3V4 1068 aa8.7□□□□□ -1.02
ZNF540-202ENST00000343599 NLRC5Q86WI3 1866 aa8.7□□□□□ -1.02
ZNF540-202ENST00000343599 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.69□□□□□ -1.02
ZNF540-202ENST00000343599 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.69□□□□□ -1.02
ZNF540-202ENST00000343599 RBM26Q5T8P6 1007 aaKnown RBP8.69□□□□□ -1.02
ZNF540-202ENST00000343599 TXNRD3Q86VQ6 643 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 MYRIPQ8NFW9 859 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 CLMNQ96JQ2 1002 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 SCN10AQ9Y5Y9 1956 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 DNAJC25-GNG10A0A024R161 153 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 CHST13Q8NET6 341 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 STK39Q9UEW8 545 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 EMSYQ7Z589 1322 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 GJA9P57773 515 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 TTC6Q86TZ1 520 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 PCSK9Q8NBP7 692 aaKnown RBP8.69□□□□□ -1.02
ZNF540-202ENST00000343599 CNNM1Q9NRU3 951 aa8.69□□□□□ -1.02
ZNF540-202ENST00000343599 DLL1O00548 723 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 SLC39A5Q6ZMH5 540 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 RPAINQ86UA6 219 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 EMID1Q96A84 441 aaPredicted RBP8.68□□□□□ -1.02
ZNF540-202ENST00000343599 CRBNQ96SW2 442 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 ZNF408Q9H9D4 720 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 SQORQ9Y6N5 450 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 PFASO15067 1338 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 TNPO2O14787 897 aaKnown RBP8.68□□□□□ -1.02
ZNF540-202ENST00000343599 HOXD8P13378 290 aaPredicted RBP8.68□□□□□ -1.02
ZNF540-202ENST00000343599 PRKCZQ05513 592 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 LMBR1LQ6UX01 489 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 GMCL1P1Q8NEA9 526 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 NSUN4Q96CB9 384 aaKnown RBP8.68□□□□□ -1.02
ZNF540-202ENST00000343599 GUCD1Q96NT3 240 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 SLC9A7Q96T83 725 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 TSPYL1Q9H0U9 437 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 UNC93B1Q9H1C4 597 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 CHMP5Q9NZZ3 219 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 ATG2AQ2TAZ0 1938 aa8.68□□□□□ -1.02
ZNF540-202ENST00000343599 ERC2O15083 957 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 CD4P01730 458 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 ERVK-9P63128 1117 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 ERVK-24P63145 666 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 PDE4DQ08499 809 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 ZNF792Q3KQV3 632 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 CCDC24Q8N4L8 307 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 ZNF330Q9Y3S2 320 aaPredicted RBP8.67□□□□□ -1.02
ZNF540-202ENST00000343599 RWDD3Q9Y3V2 267 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 ATP5J2-PTCD1G3V325 749 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 PI4K2BG5E9Z4 385 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 IPO8O15397 1037 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms