RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SUCLG2Q96I99 432 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 TFCP2L1Q9NZI6 479 aa6.38□□□□□ -1.39
CSDE1-202ENST00000339438 ALDH1L1O75891 902 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 RASSF9O75901 435 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 STARD3NLO95772 234 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 EGFRP00533 1210 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 MNAT1P51948 309 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 GRAPQ13588 217 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 TTC19Q6DKK2 380 aaPredicted RBP6.37□□□□□ -1.39
CSDE1-202ENST00000339438 HOMEZQ8IX15 550 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 GRAPLQ8TC17 118 aaPredicted RBP6.37□□□□□ -1.39
CSDE1-202ENST00000339438 SSH3Q8TE77 659 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 IRX2Q9BZI1 471 aaPredicted RBP6.37□□□□□ -1.39
CSDE1-202ENST00000339438 VIPAS39Q9H9C1 493 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 MYO1FO00160 1098 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 CIAO1O76071 339 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 ATP1A3P13637 1013 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 ANKRD13DQ6ZTN6 518 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 TTC5Q8N0Z6 440 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 LINS1Q8NG48 757 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 MRIQ9BWK5 157 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 MRPL44Q9H9J2 332 aaKnown RBP6.37□□□□□ -1.39
CSDE1-202ENST00000339438 TBC1D2BQ9UPU7 963 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 RNF40O75150 1001 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 CTSWP56202 376 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 GPSM2P81274 684 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 ATP8B2P98198 1209 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 ZKSCAN8Q15776 578 aaPredicted RBP6.37□□□□□ -1.39
CSDE1-202ENST00000339438 GRIK5Q16478 980 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 MSL1Q68DK7 614 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 TTLL5Q6EMB2 1281 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 WDR93Q6P2C0 686 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 TEX11Q8IYF3 940 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 ITFG2Q969R8 447 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 PAGR1Q9BTK6 254 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 KCNQ5Q9NR82 932 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 ANO10Q9NW15 660 aa6.37□□□□□ -1.39
CSDE1-202ENST00000339438 IRAK1P51617 712 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 HOMER1Q86YM7 354 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 VSTM4Q8IW00 320 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 KAT14Q9H8E8 782 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 KIAA1671Q9BY89 1806 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 TCRBV5S4A2TA0A5A2 114 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 TMEM232C9JQI7 657 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 SASH1O94885 1247 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 RASSF7Q02833 373 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 NEDD9Q14511 834 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 CDCA2Q69YH5 1023 aaPredicted RBP6.36□□□□□ -1.39
CSDE1-202ENST00000339438 IGSF22Q8N9C0 903 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 TC2NQ8N9U0 490 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 SH3GL2Q99962 352 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 WDFY3Q8IZQ1 3526 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 CCP110O43303 1012 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 MAP4K4O95819 1239 aaPredicted RBP6.36□□□□□ -1.39
CSDE1-202ENST00000339438 CHMP4BP1P59074 171 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 CRYMQ14894 314 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 CWF19L2Q2TBE0 894 aaKnown RBP6.36□□□□□ -1.39
CSDE1-202ENST00000339438 NBPF9Q3BBW0 867 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 CCAR1Q8IX12 1150 aaKnown RBP6.36□□□□□ -1.39
CSDE1-202ENST00000339438 CTCFLQ8NI51 663 aaPredicted RBP6.36□□□□□ -1.39
CSDE1-202ENST00000339438 CALR3Q96L12 384 aaKnown RBP6.36□□□□□ -1.39
CSDE1-202ENST00000339438 JAKMIP1Q96N16 626 aaKnown RBP6.36□□□□□ -1.39
CSDE1-202ENST00000339438 COPRSQ9NQ92 184 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 DDX20Q9UHI6 824 aaKnown RBP6.36□□□□□ -1.39
CSDE1-202ENST00000339438 HPCAL4Q9UM19 191 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 MINPP1Q9UNW1 487 aa6.36□□□□□ -1.39
CSDE1-202ENST00000339438 PHACTR2O75167 634 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 FAM160A1Q05DH4 1040 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 DACT2Q5SW24 774 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 BICD2Q8TD16 824 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 RPS6KL1Q9Y6S9 549 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 COL6A3P12111 3177 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 ARHGAP6O43182 974 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 JAK2O60674 1132 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 HMMRO75330 724 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 ERCC3P19447 782 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 CCT5P48643 541 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 IRX1P78414 480 aaPredicted RBP6.35□□□□□ -1.39
CSDE1-202ENST00000339438 FANCCQ00597 558 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 ADCY2Q08462 1091 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 PTPN21Q16825 1174 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 CST9Q5W186 159 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 RIN2Q8WYP3 895 aaPredicted RBP6.35□□□□□ -1.39
CSDE1-202ENST00000339438 DDX11Q96FC9 970 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 CABS1Q96KC9 395 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 GREM2Q9H772 168 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 MAP3K2Q9Y2U5 619 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 GAKO14976 1311 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 SHTN1A0MZ66 631 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 IKBKBO14920 756 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 CEP57L1Q8IYX8 460 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 TBC1D16Q8TBP0 767 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 N4BP2L2Q92802 583 aaPredicted RBP6.35□□□□□ -1.39
CSDE1-202ENST00000339438 RBM28Q9NW13 759 aaKnown RBP6.35□□□□□ -1.39
CSDE1-202ENST00000339438 KIAA1468Q9P260 1216 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 UNC80Q8N2C7 3258 aa6.35□□□□□ -1.39
CSDE1-202ENST00000339438 PI4KAP2A4QPH2 592 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 BECN2A8MW95 431 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 ABL1P00519 1130 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 FAM163BP0C2L3 166 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms