RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 CDC25AP30304 524 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 EPS15P42566 896 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 UBXN2AP68543 259 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 CCAR1Q8IX12 1150 aaKnown RBP18.21■□□□□ 0.51
PDGFB-201ENST00000331163 PIGSQ96S52 555 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 UBR2Q8IWV8 1755 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 FAM205CA6NFA0 338 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 LETM2Q2VYF4 491 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 CLIC6Q96NY7 704 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 HPS5Q9UPZ3 1129 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 CLIC4Q9Y696 253 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 COL4A1P02462 1669 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 RHBDL3P58872 404 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 ALX1Q15699 326 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 NBPF11Q86T75 865 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 SYT17Q9BSW7 474 aa18.21■□□□□ 0.51
PDGFB-201ENST00000331163 PES1O00541 588 aaKnown RBP18.2■□□□□ 0.5
PDGFB-201ENST00000331163 CHMP4BP1P59074 171 aa18.2■□□□□ 0.5
PDGFB-201ENST00000331163 DPY19L2Q6NUT2 758 aa18.2■□□□□ 0.5
PDGFB-201ENST00000331163 SCAND2PQ9GZW5 306 aaPredicted RBP18.2■□□□□ 0.5
PDGFB-201ENST00000331163 EEF2P13639 858 aaKnown RBP18.2■□□□□ 0.5
PDGFB-201ENST00000331163 RRP36Q96EU6 259 aaKnown RBP18.2■□□□□ 0.5
PDGFB-201ENST00000331163 MYOZ2Q9NPC6 264 aa18.2■□□□□ 0.5
PDGFB-201ENST00000331163 ZNF70Q9UC06 446 aaPredicted RBP18.2■□□□□ 0.5
PDGFB-201ENST00000331163 TGFB2P61812 414 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 TSGA10IPQ3SY00 556 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 PPP4R3BQ5MIZ7 849 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 FBXO18Q8NFZ0 1043 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 ZHX3Q9H4I2 956 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 FDPSP14324 419 aaKnown RBP18.19■□□□□ 0.5
PDGFB-201ENST00000331163 ZNF76P36508 570 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 C9orf131Q5VYM1 1079 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 SLFN13Q68D06 897 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 GGA3Q9NZ52 723 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 SORBS3O60504 671 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 DEXIO95424 95 aa18.19■□□□□ 0.5
PDGFB-201ENST00000331163 NFKBIEO00221 500 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 LIG1P18858 919 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 ECE1P42892 770 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 SP4Q02446 784 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 DGKZQ13574 1117 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 KIF4BQ2VIQ3 1234 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 SRBD1Q8N5C6 995 aaKnown RBP18.18■□□□□ 0.5
PDGFB-201ENST00000331163 CICQ96RK0 1608 aaPredicted RBP18.18■□□□□ 0.5
PDGFB-201ENST00000331163 WNT10BO00744 389 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 MBD3O95983 291 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 NUP62CLQ9H1M0 184 aa18.18■□□□□ 0.5
PDGFB-201ENST00000331163 BECN2A8MW95 431 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 AFMP43652 599 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 SULF1Q8IWU6 871 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 PDLIM2Q96JY6 352 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 RFX7Q2KHR2 1363 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 VWA3AA6NCI4 1184 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 CFBP00751 764 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 LIFRP42702 1097 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 LEO1Q8WVC0 666 aaPredicted RBP18.17■□□□□ 0.5
PDGFB-201ENST00000331163 IL17RBQ9NRM6 502 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 SPTLC2O15270 562 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 HS1BP3Q53T59 392 aa18.17■□□□□ 0.5
PDGFB-201ENST00000331163 ZKSCAN4Q969J2 545 aaPredicted RBP18.17■□□□□ 0.5
PDGFB-201ENST00000331163 KIF28PB7ZC32 967 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 CALM1P0DP23 149 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 CALM2P0DP24 149 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 CALM3P0DP25 149 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 INF2Q27J81 1249 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 WRNIP1Q96S55 665 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 ZNF341Q9BYN7 854 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 RGL2O15211 777 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 TTLL1O95922 423 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 KCNA3P22001 575 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 NOM1Q5C9Z4 860 aaKnown RBP18.16■□□□□ 0.5
PDGFB-201ENST00000331163 ACER1Q8TDN7 264 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 HACL1Q9UJ83 578 aa18.16■□□□□ 0.5
PDGFB-201ENST00000331163 SPDYE2BA6NHP3 402 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 SPDYE6P0CI01 402 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 TOP1P11387 765 aaKnown RBP18.15■□□□□ 0.5
PDGFB-201ENST00000331163 UBE2SQ16763 222 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 KLHL10Q6JEL2 608 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 LLPHQ9BRT6 129 aaKnown RBP18.15■□□□□ 0.5
PDGFB-201ENST00000331163 DEFB129Q9H1M3 183 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 KRT2P35908 639 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 NBPF12Q5TAG4 269 aaPredicted RBP18.15■□□□□ 0.5
PDGFB-201ENST00000331163 ZSCAN16Q9H4T2 348 aaPredicted RBP18.15■□□□□ 0.5
PDGFB-201ENST00000331163 PICK1Q9NRD5 415 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 THSD7AQ9UPZ6 1657 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 KLRG2A4D1S0 409 aaPredicted RBP18.15■□□□□ 0.5
PDGFB-201ENST00000331163 SMCO2A6NFE2 343 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 ADCY5O95622 1261 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 SPP2Q13103 211 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 MYSM1Q5VVJ2 828 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 FAM198AQ9UFP1 575 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 SPEF2Q9C093 1822 aa18.15■□□□□ 0.5
PDGFB-201ENST00000331163 FAM205AQ6ZU69 1335 aa18.14■□□□□ 0.5
PDGFB-201ENST00000331163 USP17L10C9JJH3 530 aa18.14■□□□□ 0.5
PDGFB-201ENST00000331163 NOLC1Q14978 699 aaKnown RBP eCLIP18.14■□□□□ 0.5
PDGFB-201ENST00000331163 HHIPL2Q6UWX4 724 aa18.14■□□□□ 0.5
PDGFB-201ENST00000331163 MTERF4Q7Z6M4 381 aaKnown RBP18.14■□□□□ 0.5
PDGFB-201ENST00000331163 DCPSQ96C86 337 aaKnown RBP18.14■□□□□ 0.5
PDGFB-201ENST00000331163 CCDC94Q9BW85 323 aaPredicted RBP18.14■□□□□ 0.5
PDGFB-201ENST00000331163 PPP4CP60510 307 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms