RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 CHPF2Q9P2E5 772 aa7.47□□□□□ -1.21
ZNF540-201ENST00000316433 COL5A3P25940 1745 aaPredicted RBP7.47□□□□□ -1.21
ZNF540-201ENST00000316433 COL24A1Q17RW2 1714 aa7.47□□□□□ -1.21
ZNF540-201ENST00000316433 GRIN2DO15399 1336 aa7.47□□□□□ -1.21
ZNF540-201ENST00000316433 NCKAP5LQ9HCH0 1330 aa7.47□□□□□ -1.21
ZNF540-201ENST00000316433 MEGF6O75095 1541 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 ZSCAN12O43309 604 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 TUBBP07437 444 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 IFIT2P09913 472 aaKnown RBP7.46□□□□□ -1.21
ZNF540-201ENST00000316433 DEUP1Q05D60 604 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 GCKRQ14397 625 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 ALX1Q15699 326 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 ADCK5Q3MIX3 580 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 ZNF662Q6ZS27 426 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 DHX32Q7L7V1 743 aaKnown RBP7.46□□□□□ -1.21
ZNF540-201ENST00000316433 SRGAP1Q7Z6B7 1085 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 PHC3Q8NDX5 983 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 RUBCNQ92622 972 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 RILPL2Q969X0 211 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 CCDC47Q96A33 483 aaKnown RBP7.46□□□□□ -1.21
ZNF540-201ENST00000316433 TPX2Q9ULW0 747 aaKnown RBP7.46□□□□□ -1.21
ZNF540-201ENST00000316433 RTL9Q8NET4 1388 aa7.46□□□□□ -1.21
ZNF540-201ENST00000316433 PI4KAP2A4QPH2 592 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 SEMA3EO15041 775 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 WDHD1O75717 1129 aaPredicted RBP7.46□□□□□ -1.22
ZNF540-201ENST00000316433 GNAT1P11488 350 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 GJA8P48165 433 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 MCMDC2Q4G0Z9 681 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 SPTY2D1Q68D10 685 aaPredicted RBP7.46□□□□□ -1.22
ZNF540-201ENST00000316433 C11orf57Q6ZUT1 292 aaPredicted RBP7.46□□□□□ -1.22
ZNF540-201ENST00000316433 CDC37L1Q7L3B6 337 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 PI4KAP1Q8N8J0 262 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 KCNV2Q8TDN2 545 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 ZFAND2BQ8WV99 257 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 SPATA32Q96LK8 384 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 CAPS2Q9BXY5 557 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 EHD4Q9H223 541 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 RABEP2Q9H5N1 569 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 MYH2Q9UKX2 1941 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 C10orf71Q711Q0 1435 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 VWA3AA6NCI4 1184 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 GOLGA6L10A6NI86 522 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 PDLIM1O00151 329 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 CAPN15O75808 1086 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 IGKV5-2P06315 115 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 GNG11P61952 73 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 MPP3Q13368 585 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 TMC6Q7Z403 805 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 TRIML1Q8N9V2 468 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 DHX58Q96C10 678 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 EAF2Q96CJ1 260 aaPredicted RBP7.46□□□□□ -1.22
ZNF540-201ENST00000316433 ACSBG1Q96GR2 724 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 NEK1Q96PY6 1258 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 WDR24Q96S15 920 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 TSC22D3Q99576 134 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 ZSWIM4Q9H7M6 989 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 PHAXQ9H814 394 aaKnown RBP7.46□□□□□ -1.22
ZNF540-201ENST00000316433 TMOD4Q9NZQ9 345 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 ANKIB1Q9P2G1 1089 aa7.46□□□□□ -1.22
ZNF540-201ENST00000316433 GOLGA6L7A0A1B0GV03 622 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 NDUFAB1O14561 156 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 LIN7AO14910 233 aaPredicted RBP7.45□□□□□ -1.22
ZNF540-201ENST00000316433 GNGT1P63211 74 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 ACCSLQ4AC99 568 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 TNNI3KQ59H18 835 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 ARMC9Q7Z3E5 817 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 TAX1BP1Q86VP1 789 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 CCAR1Q8IX12 1150 aaKnown RBP7.45□□□□□ -1.22
ZNF540-201ENST00000316433 CCDC170Q8IYT3 715 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 FUKQ8N0W3 1084 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 NSMCE1Q8WV22 266 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 SUCLG2Q96I99 432 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 UPF3BQ9BZI7 483 aaKnown RBP7.45□□□□□ -1.22
ZNF540-201ENST00000316433 SLC52A2Q9HAB3 445 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 FPGT-TNNI3KV9GXZ4 949 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 COL14A1Q05707 1796 aaKnown RBP7.45□□□□□ -1.22
ZNF540-201ENST00000316433 GOLGA6L4A6NEF3 574 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 BTBD11A6QL63 1104 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 PPFIA3O75145 1194 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 KIF4AO95239 1232 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 SSBP05455 408 aaKnown RBP eCLIP7.45□□□□□ -1.22
ZNF540-201ENST00000316433 EIF4BP23588 611 aaKnown RBP7.45□□□□□ -1.22
ZNF540-201ENST00000316433 VSNL1P62760 191 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 PTPN12Q05209 780 aaKnown RBP7.45□□□□□ -1.22
ZNF540-201ENST00000316433 IFFO1Q0D2I5 559 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 DRP2Q13474 957 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 CUL3Q13618 768 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 SLMAPQ14BN4 828 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 CCDC83Q8IWF9 413 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 GALNT15Q8N3T1 639 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 ZNF579Q8NAF0 562 aaKnown RBP7.45□□□□□ -1.22
ZNF540-201ENST00000316433 CUL5Q93034 780 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 KIFC2Q96AC6 838 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 PAGR1Q9BTK6 254 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 UNC45AQ9H3U1 944 aa7.45□□□□□ -1.22
ZNF540-201ENST00000316433 KIF13BQ9NQT8 1826 aa7.44□□□□□ -1.22
ZNF540-201ENST00000316433 DDX60LQ5H9U9 1706 aaKnown RBP7.44□□□□□ -1.22
ZNF540-201ENST00000316433 A0A0D9SFI3 127 aa7.44□□□□□ -1.22
ZNF540-201ENST00000316433 LRRC10BA6NIK2 292 aa7.44□□□□□ -1.22
ZNF540-201ENST00000316433 M0R2C6 588 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms