RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 CTAGE4Q8IX94 777 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 NLRP7Q8WX94 980 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 ABCA10Q8WWZ4 1543 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 KIAA0232Q92628 1395 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 ZBTB7BO15156 539 aaPredicted RBP8.68□□□□□ -1.02
SCN9A-201ENST00000303354 INF2Q27J81 1249 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 IQUBQ8NA54 791 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 UHMK1Q8TAS1 419 aaKnown RBP8.68□□□□□ -1.02
SCN9A-201ENST00000303354 ZNF804BA4D1E1 1349 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 PRKAB2O43741 272 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 TLR7Q9NYK1 1049 aaKnown RBP8.68□□□□□ -1.02
SCN9A-201ENST00000303354 TYRO3Q06418 890 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 UBE2SQ16763 222 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 PI16Q6UXB8 463 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 NSMCE1Q8WV22 266 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 PLVAPQ9BX97 442 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 SERTAD1Q9UHV2 236 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 CD2APQ9Y5K6 639 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 MROH5Q6ZUA9 1318 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 ZWINTO95229 277 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 MMP10P09238 476 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 HSPA1LP34931 641 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 IFNL3Q8IZI9 196 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 TMEM94Q12767 1356 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 E7EWF7 191 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 RPL13P26373 211 aaKnown RBP8.67□□□□□ -1.02
SCN9A-201ENST00000303354 GSDMDP57764 484 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 GPATCH11Q8N954 259 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 IL17REQ8NFR9 667 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 CTTNBP2NLQ9P2B4 639 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 SLU7O95391 586 aaKnown RBP8.67□□□□□ -1.02
SCN9A-201ENST00000303354 OTUD6AQ7L8S5 288 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 ALKBH8Q96BT7 664 aaKnown RBP8.67□□□□□ -1.02
SCN9A-201ENST00000303354 TRPM2O94759 1503 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 KCTD2Q14681 263 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 KIAA1841Q6NSI8 718 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 ZSCAN30Q86W11 494 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 GPBP1Q86WP2 473 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 DISC1Q9NRI5 854 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 HAUS3Q68CZ6 603 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 CCDC122Q5T0U0 273 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 NME8Q8N427 588 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 CLIC6Q96NY7 704 aa8.67□□□□□ -1.02
SCN9A-201ENST00000303354 FAM49AQ9H0Q0 323 aaPredicted RBP8.67□□□□□ -1.02
SCN9A-201ENST00000303354 TSR3Q9UJK0 312 aaKnown RBP8.67□□□□□ -1.02
SCN9A-201ENST00000303354 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.67□□□□□ -1.02
SCN9A-201ENST00000303354 RIOK3O14730 519 aaKnown RBP8.66□□□□□ -1.02
SCN9A-201ENST00000303354 HOXA13P31271 388 aaPredicted RBP8.66□□□□□ -1.02
SCN9A-201ENST00000303354 GNPTABQ3T906 1256 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 MTERF2Q49AM1 385 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 CNKSR1Q969H4 720 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 TBC1D32Q96NH3 1257 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 FAM207AQ9NSI2 230 aaPredicted RBP8.66□□□□□ -1.02
SCN9A-201ENST00000303354 EXOC7Q9UPT5 735 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 NSD2O96028 1365 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 GOLGA8CPA6NN73 597 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 SRGAP2CP0DJJ0 459 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 GOLGA8FQ08AF8 430 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 GOLGA8DPQ0D2H9 430 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 MGARPQ8TDB4 240 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 CHURC1Q8WUH1 139 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 NUB1Q9Y5A7 615 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 ZNF518AQ6AHZ1 1483 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 HPDP32754 393 aaPredicted RBP8.66□□□□□ -1.02
SCN9A-201ENST00000303354 FAM117BQ6P1L5 589 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 BUB1BO60566 1050 aaPredicted RBP8.66□□□□□ -1.02
SCN9A-201ENST00000303354 SYNE4Q8N205 404 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 PI4K2BQ8TCG2 481 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 ANTXR1Q9H6X2 564 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 DCTPP1Q9H773 170 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 TTC41PQ6P2S7 1318 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 CHRNA5P30532 468 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 KRT81Q14533 505 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 INO80B-WBP1J3KQ70 363 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 BUB1O43683 1085 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 BMP15O95972 392 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 INO80BQ9C086 356 aaPredicted RBP8.66□□□□□ -1.02
SCN9A-201ENST00000303354 A0A0G2JLW4 131 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 CTAGE9A4FU28 777 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 USP17L8P0C7I0 530 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 ADD1P35611 737 aaKnown RBP8.66□□□□□ -1.02
SCN9A-201ENST00000303354 TYW1BQ6NUM6 668 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 NLGN1Q8N2Q7 840 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 HOOK2Q96ED9 719 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 LSM14BQ9BX40 385 aaKnown RBP8.66□□□□□ -1.02
SCN9A-201ENST00000303354 SLITRK6Q9H5Y7 841 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 IL16Q14005 1332 aa8.66□□□□□ -1.02
SCN9A-201ENST00000303354 KLRF2D3W0D1 207 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 ITIH3Q06033 890 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 LRRC41Q15345 812 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 CDC37L1Q7L3B6 337 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 NELFBQ8WX92 580 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 DDX25Q9UHL0 483 aaKnown RBP8.65□□□□□ -1.02
SCN9A-201ENST00000303354 LUC7L2Q9Y383 392 aaKnown RBP8.65□□□□□ -1.02
SCN9A-201ENST00000303354 PTPRKQ15262 1439 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 SFI1A8K8P3 1242 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 TNFAIP1Q13829 316 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 CCDC110Q8TBZ0 833 aa8.65□□□□□ -1.02
SCN9A-201ENST00000303354 TDRD3Q9H7E2 651 aaKnown RBP8.65□□□□□ -1.02
SCN9A-201ENST00000303354 SLC39A2Q9NP94 309 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms