RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 SCP2P22307 547 aa12.93□□□□□ -0.34
SHROOM3-201ENST00000296043 FAM207AQ9NSI2 230 aaPredicted RBP12.93□□□□□ -0.34
SHROOM3-201ENST00000296043 TMA7Q9Y2S6 64 aaKnown RBP12.93□□□□□ -0.34
SHROOM3-201ENST00000296043 GNAT3A8MTJ3 354 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 KRT82Q9NSB4 513 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 MKL2Q9ULH7 1088 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 ESYT2A0FGR8 921 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 ELF1P32519 619 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 DBNLQ9UJU6 430 aaKnown RBP12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 STK10O94804 968 aaKnown RBP12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 ADCY8P40145 1251 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 IFIT5Q13325 482 aaKnown RBP12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 POLKQ9UBT6 870 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 PARP2Q9UGN5 583 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 ADAM21Q9UKJ8 722 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 DCLK2Q8N568 766 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 POSTNQ15063 836 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 LSM14BQ9BX40 385 aaKnown RBP12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 ENC1O14682 589 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 PDCLQ13371 301 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 PHLPP2Q6ZVD8 1323 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 SPAG7O75391 227 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 TRIM60Q495X7 471 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 CHAMP1Q96JM3 812 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 SH3GL2Q99962 352 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 KRT23Q9C075 422 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 CNOT10Q9H9A5 744 aaKnown RBP12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 ARHGAP44Q17R89 818 aa12.92□□□□□ -0.34
SHROOM3-201ENST00000296043 ATP8B1O43520 1251 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 SLCO1A2P46721 670 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 THOC1Q96FV9 657 aaKnown RBP12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 KIF2CQ99661 725 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 SMYD3Q9H7B4 428 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 GEMIN8Q9NWZ8 242 aaKnown RBP12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 NR1I2O75469 434 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 TNNI2P48788 182 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 OCA2Q04671 838 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 PLEKHM2Q8IWE5 1019 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 OTUD6AQ7L8S5 288 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 ZKSCAN3Q9BRR0 538 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 NCOA5Q9HCD5 579 aaKnown RBP12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 CHCHD3Q9NX63 227 aaKnown RBP12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 MAP3K2Q9Y2U5 619 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 TRPC1P48995 793 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 TBC1D7Q9P0N9 293 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 BICDL1Q6ZP65 573 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 APBA1Q02410 837 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 SLC44A4Q53GD3 710 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 ACBD5Q5T8D3 534 aaPredicted RBP12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 LIN9Q5TKA1 542 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 KLC4Q9NSK0 619 aa12.91□□□□□ -0.34
SHROOM3-201ENST00000296043 TTC4O95801 387 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 PHBP35232 272 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 FLOT2Q14254 428 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 TRIML2Q8N7C3 387 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 TDRD9Q8NDG6 1382 aaKnown RBP12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 NUP58Q9BVL2 599 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 RTL9Q8NET4 1388 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 IFNB1P01574 187 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 ARHGAP4P98171 946 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 MSANTD4Q8NCY6 345 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 MYO1AQ9UBC5 1043 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 CDC23Q9UJX2 597 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 MCF2LO15068 1137 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 CASP8Q14790 479 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 ARHGAP18Q8N392 663 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 CCDC169A6NNP5 214 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 SLC4A1P02730 911 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 GABPAQ06546 454 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 MCMDC2Q4G0Z9 681 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 ECT2Q9H8V3 914 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 PALM2Q8IXS6 379 aa12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 TAB3Q8N5C8 712 aaPredicted RBP12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 PACSIN2Q9UNF0 486 aaPredicted RBP12.9□□□□□ -0.34
SHROOM3-201ENST00000296043 KCNJ18B7U540 433 aa12.9□□□□□ -0.35
SHROOM3-201ENST00000296043 GCFC2P16383 781 aaKnown RBP12.9□□□□□ -0.35
SHROOM3-201ENST00000296043 KCNJ12Q14500 433 aa12.9□□□□□ -0.35
SHROOM3-201ENST00000296043 TMED2Q15363 201 aa12.9□□□□□ -0.35
SHROOM3-201ENST00000296043 NBPF9Q3BBW0 867 aa12.9□□□□□ -0.35
SHROOM3-201ENST00000296043 TNNQ9UQP3 1299 aa12.9□□□□□ -0.35
SHROOM3-201ENST00000296043 PPME1Q9Y570 386 aa12.9□□□□□ -0.35
SHROOM3-201ENST00000296043 RAD23BP54727 409 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 NAA35Q5VZE5 725 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 RHPN1Q8TCX5 695 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 TATP17735 454 aaPredicted RBP12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 PDE4BQ07343 736 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 CAVIN4Q5BKX8 364 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 CNNM4Q6P4Q7 775 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 MBIPQ9NS73 344 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 AMFRQ9UKV5 643 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 BAG5Q9UL15 447 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 PTPN21Q16825 1174 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 ATL3Q6DD88 541 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 OLFM3Q96PB7 478 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 HAUS2Q9NVX0 235 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 ANKRD12Q6UB98 2062 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 DHX9Q08211 1270 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 CABP5Q9NP86 173 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 STRIP2Q9ULQ0 834 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 ATP8A1Q9Y2Q0 1164 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms