RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 MYO6Q9UM54 1294 aa17.69■□□□□ 0.42
CTDSP1-201ENST00000273062 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.69■□□□□ 0.42
CTDSP1-201ENST00000273062 ARHGAP25P42331 645 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 PPARDQ03181 441 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 IFT88Q13099 833 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 TICAM2Q86XR7 235 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 SPDYE1Q8NFV5 336 aaPredicted RBP17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 LMBR1Q8WVP7 490 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 NEUROD6Q96NK8 337 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 KAT6BQ8WYB5 2073 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 ATP5JP18859 108 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 GBP2P32456 591 aaPredicted RBP17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 FMR1Q06787 632 aaKnown RBP eCLIP17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 FOXP4Q8IVH2 680 aaPredicted RBP17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 TUBE1Q9UJT0 475 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 MYH15Q9Y2K3 1946 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 PSMD2Q13200 908 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 FAM89AQ96GI7 184 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 ATP6V0A4Q9HBG4 840 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 GJB4Q9NTQ9 266 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 HAUS2Q9NVX0 235 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 TRIM10Q9UDY6 481 aa17.68■□□□□ 0.42
CTDSP1-201ENST00000273062 MED23Q9ULK4 1368 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 TEX33O43247 280 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 MYO1BO43795 1136 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 TUBBP07437 444 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 EZRP15311 586 aaKnown RBP17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 MARCKSP29966 332 aaPredicted RBP17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 SEC24CP53992 1094 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 KCTD16Q68DU8 428 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 FUKQ8N0W3 1084 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 SPTLC2O15270 562 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 RPS6KA3P51812 740 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 CDR1P51861 262 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 GUCY1A3Q02108 690 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 RBL2Q08999 1139 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 THEMIS2Q5TEJ8 643 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 CAPZA3Q96KX2 299 aa17.67■□□□□ 0.42
CTDSP1-201ENST00000273062 SNUPNO95149 360 aaKnown RBP17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 RWDD2BP57060 319 aa17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 TUBB4BP68371 445 aa17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 MRPS25P82663 173 aaKnown RBP17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 HDLBPQ00341 1268 aaKnown RBP17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 FKBP15Q5T1M5 1219 aa17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 NEK1Q96PY6 1258 aa17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 AKR1B15C9JRZ8 316 aaPredicted RBP17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 FOXN1O15353 648 aa17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 ICA1Q05084 483 aa17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 HLFQ16534 295 aa17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 RASGRP2Q7LDG7 609 aa17.66■□□□□ 0.42
CTDSP1-201ENST00000273062 ROBO1Q9Y6N7 1651 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 APBA1Q02410 837 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 ISCA1Q9BUE6 129 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 SLC39A2Q9NP94 309 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 NFE2L3Q9Y4A8 694 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 DISP2A7MBM2 1401 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 ZNF609O15014 1411 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 HIP1O00291 1037 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 ADAMTS2O95450 1211 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 TCIRG1Q13488 830 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 TUBB2AQ13885 445 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 ZNF827Q17R98 1081 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 ZNF513Q8N8E2 541 aaPredicted RBP17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 ZNF473Q8WTR7 871 aaKnown RBP17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 TUBB2BQ9BVA1 445 aa17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 NUCKS1Q9H1E3 243 aaKnown RBP17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 SAMSN1Q9NSI8 373 aaKnown RBP17.65■□□□□ 0.42
CTDSP1-201ENST00000273062 TBC1D25Q3MII6 688 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 ATL3Q6DD88 541 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 SND1Q7KZF4 910 aaKnown RBP eCLIP17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 YTHDF3Q7Z739 585 aaKnown RBP17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 TBC1D31Q96DN5 1066 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 CCDC114Q96M63 670 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 MED15Q96RN5 788 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 SNRKQ9NRH2 765 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 A0A0G2JS52 829 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 DNM1LO00429 736 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 IPO7O95373 1038 aaKnown RBP17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 LSP1P33241 339 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 RAB27AP51159 221 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 CCNI2Q6ZMN8 369 aaPredicted RBP17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 METTL16Q86W50 562 aaKnown RBP17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 HAUS7Q99871 368 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 TFR2Q9UP52 801 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 ITGB4P16144 1822 aa17.64■□□□□ 0.41
CTDSP1-201ENST00000273062 TAF5LO75529 589 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 ZNF18P17022 549 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 SKOR1P84550 965 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 C3orf20Q8ND61 904 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 RNPC3Q96LT9 517 aaKnown RBP17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 COL16A1Q07092 1604 aaPredicted RBP17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 EYA2O00167 538 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 MYSM1Q5VVJ2 828 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 RCSD1Q6JBY9 416 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 MAB21L3Q8N8X9 362 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 TSEN2Q8NCE0 465 aaKnown RBP17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 KCNG4Q8TDN1 519 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 PANX2Q96RD6 677 aa17.63■□□□□ 0.41
CTDSP1-201ENST00000273062 TTC36A6NLP5 189 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms