RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 LDHBP07195 334 aaKnown RBP18.9■□□□□ 0.62
VPS54-201ENST00000272322 SCG2P13521 617 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 ATP2B2Q01814 1243 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 FAM196AQ6ZSG2 479 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 FAM205AQ6ZU69 1335 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 FBXO33Q7Z6M2 555 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 UBA5Q9GZZ9 404 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 KLHL34Q8N239 644 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 TAB2Q9NYJ8 693 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 PPP2R2CQ9Y2T4 447 aa18.9■□□□□ 0.62
VPS54-201ENST00000272322 TRIM49BA6NDI0 452 aa18.89■□□□□ 0.61
VPS54-201ENST00000272322 PRPF3O43395 683 aaKnown RBP18.89■□□□□ 0.61
VPS54-201ENST00000272322 ETF1P62495 437 aaKnown RBP18.89■□□□□ 0.61
VPS54-201ENST00000272322 MORC3Q14149 939 aa18.89■□□□□ 0.61
VPS54-201ENST00000272322 SPECC1LQ69YQ0 1117 aa18.89■□□□□ 0.61
VPS54-201ENST00000272322 ZNF444Q8N0Y2 327 aaPredicted RBP18.89■□□□□ 0.61
VPS54-201ENST00000272322 IGSF22Q8N9C0 903 aa18.89■□□□□ 0.61
VPS54-201ENST00000272322 RBL2Q08999 1139 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 IL17AQ16552 155 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 TEX35Q5T0J7 233 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 MLKLQ8NB16 471 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 CDCA7Q9BWT1 371 aaPredicted RBP18.88■□□□□ 0.61
VPS54-201ENST00000272322 IL17RBQ9NRM6 502 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 USP17L2Q6R6M4 530 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 CLEC4GQ6UXB4 293 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 MYH7P12883 1935 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 NPY5RQ15761 445 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 TC2NQ8N9U0 490 aa18.88■□□□□ 0.61
VPS54-201ENST00000272322 CNTNAP5Q8WYK1 1306 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 SYNRGQ9UMZ2 1314 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 N4BP3O15049 544 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 PPFIBP1Q86W92 1011 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 BRIP1Q9BX63 1249 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 TFR2Q9UP52 801 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 STRCQ7RTU9 1775 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 CCDC194A0A1B0GVG4 234 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 C6orf229H3BNL8 230 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 ABL1P00519 1130 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 SLFN14P0C7P3 912 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 CASP14P31944 242 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 RCSD1Q6JBY9 416 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 SEC31AO94979 1220 aaKnown RBP18.87■□□□□ 0.61
VPS54-201ENST00000272322 UBXN4Q92575 508 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 TMEM60Q9H2L4 133 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 SPEF2Q9C093 1822 aa18.87■□□□□ 0.61
VPS54-201ENST00000272322 LETM2Q2VYF4 491 aa18.86■□□□□ 0.61
VPS54-201ENST00000272322 HPS3Q969F9 1004 aa18.86■□□□□ 0.61
VPS54-201ENST00000272322 ZNF219Q9P2Y4 722 aaPredicted RBP18.86■□□□□ 0.61
VPS54-201ENST00000272322 NARFQ9UHQ1 456 aa18.86■□□□□ 0.61
VPS54-201ENST00000272322 MTRQ99707 1265 aa18.86■□□□□ 0.61
VPS54-201ENST00000272322 RNF216Q9NWF9 866 aaPredicted RBP18.86■□□□□ 0.61
VPS54-201ENST00000272322 PUF60Q9UHX1 559 aaKnown RBP18.86■□□□□ 0.61
VPS54-201ENST00000272322 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.86■□□□□ 0.615e-6■■■□□ 18.6
VPS54-201ENST00000272322 UFL1O94874 794 aa18.86■□□□□ 0.61
VPS54-201ENST00000272322 REXO1L1PQ8IX06 675 aa18.86■□□□□ 0.61
VPS54-201ENST00000272322 CCDC12Q8WUD4 166 aaPredicted RBP18.86■□□□□ 0.61
VPS54-201ENST00000272322 UBAP1LF5GYI3 381 aa18.85■□□□□ 0.61
VPS54-201ENST00000272322 MXD3Q9BW11 206 aa18.85■□□□□ 0.61
VPS54-201ENST00000272322 MRPL44Q9H9J2 332 aaKnown RBP18.85■□□□□ 0.61
VPS54-201ENST00000272322 MYH3P11055 1940 aa18.85■□□□□ 0.61
VPS54-201ENST00000272322 PAPPAQ13219 1627 aa18.85■□□□□ 0.61
VPS54-201ENST00000272322 FRMPD2Q68DX3 1309 aaPredicted RBP18.85■□□□□ 0.61
VPS54-201ENST00000272322 STAT6P42226 847 aa18.85■□□□□ 0.61
VPS54-201ENST00000272322 SARSP49591 514 aaKnown RBP18.85■□□□□ 0.61
VPS54-201ENST00000272322 ENOX1Q8TC92 643 aaKnown RBP18.85■□□□□ 0.61
VPS54-201ENST00000272322 ERO1AQ96HE7 468 aa18.85■□□□□ 0.61
VPS54-201ENST00000272322 CGNQ9P2M7 1197 aaKnown RBP18.85■□□□□ 0.61
VPS54-201ENST00000272322 DACH1Q9UI36 760 aa18.85■□□□□ 0.61
VPS54-201ENST00000272322 XDHP47989 1333 aa18.85■□□□□ 0.61
VPS54-201ENST00000272322 JAKMIP3Q5VZ66 844 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 CNBD1Q8NA66 436 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 ACRBPQ8NEB7 543 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 NOL10Q9BSC4 688 aaKnown RBP18.84■□□□□ 0.61
VPS54-201ENST00000272322 RBM28Q9NW13 759 aaKnown RBP18.84■□□□□ 0.61
VPS54-201ENST00000272322 ANAPC4Q9UJX5 808 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 TRIM65Q6PJ69 517 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 GJA10Q969M2 543 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 CCDC34Q96HJ3 373 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 NUP88Q99567 741 aaPredicted RBP18.84■□□□□ 0.61
VPS54-201ENST00000272322 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.84■□□□□ 0.61
VPS54-201ENST00000272322 RNF225M0QZC1 329 aaPredicted RBP18.84■□□□□ 0.61
VPS54-201ENST00000272322 TRAPPC3LQ5T215 181 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 BLIDQ8IZY5 108 aa18.84■□□□□ 0.61
VPS54-201ENST00000272322 PSDA5PKW4 1024 aaPredicted RBP18.83■□□□□ 0.61
VPS54-201ENST00000272322 CYTH3O43739 400 aa18.83■□□□□ 0.61
VPS54-201ENST00000272322 ZSCAN20P17040 1043 aaPredicted RBP18.83■□□□□ 0.61
VPS54-201ENST00000272322 ZNF771Q7L3S4 317 aaPredicted RBP18.83■□□□□ 0.61
VPS54-201ENST00000272322 IQUBQ8NA54 791 aa18.83■□□□□ 0.61
VPS54-201ENST00000272322 HINFPQ9BQA5 517 aa18.83■□□□□ 0.61
VPS54-201ENST00000272322 THRAP3Q9Y2W1 955 aaKnown RBP18.83■□□□□ 0.61
VPS54-201ENST00000272322 RPS6KA4O75676 772 aa18.83■□□□□ 0.6
VPS54-201ENST00000272322 CASQ1P31415 396 aa18.83■□□□□ 0.6
VPS54-201ENST00000272322 FXR1P51114 621 aaKnown RBP eCLIP18.83■□□□□ 0.6
VPS54-201ENST00000272322 RPGRQ92834 1020 aaKnown RBP18.83■□□□□ 0.6
VPS54-201ENST00000272322 FAM237AA0A1B0GTK4 181 aa18.83■□□□□ 0.6
VPS54-201ENST00000272322 ARHGAP6O43182 974 aa18.83■□□□□ 0.6
VPS54-201ENST00000272322 ZNF18P17022 549 aa18.83■□□□□ 0.6
VPS54-201ENST00000272322 UBA7P41226 1012 aa18.83■□□□□ 0.6
VPS54-201ENST00000272322 SLC35G1Q2M3R5 365 aa18.83■□□□□ 0.6
VPS54-201ENST00000272322 KANK3Q6NY19 840 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms