RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MTMR4Q9NYA4 1195 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 MRVI1Q9Y6F6 885 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 MYH8P13535 1937 aa19.06■□□□□ 0.64
USP4-201ENST00000265560 PRPF3O43395 683 aaKnown RBP19.05■□□□□ 0.64
USP4-201ENST00000265560 FKBP1AP62942 108 aaKnown RBP19.05■□□□□ 0.64
USP4-201ENST00000265560 CKAP2LQ8IYA6 745 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 WASF1Q92558 559 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 CSRNP1Q96S65 589 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.05■□□□□ 0.64
USP4-201ENST00000265560 PCDHA7Q9UN72 937 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 KLRF2D3W0D1 207 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 JAG1P78504 1218 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 MIGA2Q7L4E1 593 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 ERCC4Q92889 916 aaPredicted RBP19.05■□□□□ 0.64
USP4-201ENST00000265560 TRIM34Q9BYJ4 488 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 GOLPH3LQ9H4A5 285 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 KIF13BQ9NQT8 1826 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 MYH15Q9Y2K3 1946 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 KIF5BP33176 963 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 RCAN1P53805 252 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 HDLBPQ00341 1268 aaKnown RBP19.05■□□□□ 0.64
USP4-201ENST00000265560 SAFBQ15424 915 aaKnown RBP eCLIP19.05■□□□□ 0.64
USP4-201ENST00000265560 RBSNQ9H1K0 784 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 GPCPD1Q9NPB8 672 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 TCP11L1Q9NUJ3 509 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 ELP1O95163 1332 aa19.05■□□□□ 0.64
USP4-201ENST00000265560 A0A1B0GVL5 298 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 ANO1Q5XXA6 986 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 BRAPQ7Z569 592 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 NOSTRINQ8IVI9 506 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 CCAR1Q8IX12 1150 aaKnown RBP19.04■□□□□ 0.64
USP4-201ENST00000265560 LINC00301Q8NCQ3 95 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 TMEM39BQ9GZU3 492 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 PI4KBQ9UBF8 816 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 RRP1BQ14684 758 aaKnown RBP19.04■□□□□ 0.64
USP4-201ENST00000265560 RASGRP4Q8TDF6 673 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 IDI2Q9BXS1 227 aa19.04■□□□□ 0.64
USP4-201ENST00000265560 U2AF2P26368 475 aaKnown RBP eCLIP19.03■□□□□ 0.64
USP4-201ENST00000265560 TOB1P50616 345 aaPredicted RBP19.03■□□□□ 0.64
USP4-201ENST00000265560 GRM4Q14833 912 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 SPECC1Q5M775 1068 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 CIAPIN1Q6FI81 312 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 TYW1BQ6NUM6 668 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 CLIC6Q96NY7 704 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 MRIQ9BWK5 157 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 TOP1P11387 765 aaKnown RBP19.03■□□□□ 0.64
USP4-201ENST00000265560 ZNF445P59923 1031 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 CERKLQ49MI3 558 aaPredicted RBP19.03■□□□□ 0.64
USP4-201ENST00000265560 HEATR3Q7Z4Q2 680 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 ANKS1AQ92625 1134 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 RTEL1Q9NZ71 1219 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 ZNF70Q9UC06 446 aaPredicted RBP19.03■□□□□ 0.64
USP4-201ENST00000265560 ASTN2O75129 1339 aaPredicted RBP19.03■□□□□ 0.64
USP4-201ENST00000265560 A0A087WWV3 80 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 WNT7AO00755 349 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 SCG2P13521 617 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 SEPT2Q15019 361 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 PPP2R5BQ15173 497 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 CCDC183Q5T5S1 534 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 SOGA3Q5TF21 947 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 SAMD7Q7Z3H4 446 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 HDAC9Q9UKV0 1011 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 CD2APQ9Y5K6 639 aa19.03■□□□□ 0.64
USP4-201ENST00000265560 SPTLC2O15270 562 aa19.02■□□□□ 0.64
USP4-201ENST00000265560 PARP1P09874 1014 aaKnown RBP19.02■□□□□ 0.64
USP4-201ENST00000265560 SLC16A2P36021 539 aa19.02■□□□□ 0.64
USP4-201ENST00000265560 SYAP1Q96A49 352 aaPredicted RBP19.02■□□□□ 0.64
USP4-201ENST00000265560 GRIPAP1Q4V328 841 aa19.02■□□□□ 0.63
USP4-201ENST00000265560 TTBK2Q6IQ55 1244 aa19.02■□□□□ 0.63
USP4-201ENST00000265560 KCTD1Q719H9 257 aa19.02■□□□□ 0.63
USP4-201ENST00000265560 PCDHB6Q9Y5E3 794 aa19.02■□□□□ 0.63
USP4-201ENST00000265560 NLRP5P59047 1200 aa19.01■□□□□ 0.63
USP4-201ENST00000265560 LRSAM1Q6UWE0 723 aa19.01■□□□□ 0.63
USP4-201ENST00000265560 FSIP1Q8NA03 581 aa19.01■□□□□ 0.63
USP4-201ENST00000265560 PALM3A6NDB9 673 aaPredicted RBP19.01■□□□□ 0.63
USP4-201ENST00000265560 TMOD2Q9NZR1 351 aa19.01■□□□□ 0.63
USP4-201ENST00000265560 WNT10BO00744 389 aa19■□□□□ 0.63
USP4-201ENST00000265560 PHF20Q9BVI0 1012 aa19■□□□□ 0.63
USP4-201ENST00000265560 DHX36Q9H2U1 1008 aaKnown RBP19■□□□□ 0.63
USP4-201ENST00000265560 PDHBP11177 359 aa19■□□□□ 0.63
USP4-201ENST00000265560 NPY5RQ15761 445 aa19■□□□□ 0.63
USP4-201ENST00000265560 TBC1D10BQ4KMP7 808 aaPredicted RBP19■□□□□ 0.63
USP4-201ENST00000265560 ARHGAP27Q6ZUM4 889 aa19■□□□□ 0.63
USP4-201ENST00000265560 CCDC84Q86UT8 332 aaPredicted RBP19■□□□□ 0.63
USP4-201ENST00000265560 SWAP70Q9UH65 585 aa19■□□□□ 0.63
USP4-201ENST00000265560 TTLL1O95922 423 aa19■□□□□ 0.63
USP4-201ENST00000265560 EEF2P13639 858 aaKnown RBP19■□□□□ 0.63
USP4-201ENST00000265560 GRIN1Q05586 938 aa19■□□□□ 0.63
USP4-201ENST00000265560 PFKFB3Q16875 520 aaPredicted RBP19■□□□□ 0.63
USP4-201ENST00000265560 PIGSQ96S52 555 aa19■□□□□ 0.63
USP4-201ENST00000265560 FHDC1Q9C0D6 1143 aaPredicted RBP19■□□□□ 0.63
USP4-201ENST00000265560 POLR3EQ9NVU0 708 aa19■□□□□ 0.63
USP4-201ENST00000265560 BRCA1P38398 1863 aaKnown RBP18.99■□□□□ 0.63
USP4-201ENST00000265560 GH2P01242 217 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 XBP1P17861 261 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 SIPA1L1O43166 1804 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 CCDC178Q5BJE1 867 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 WWC2Q6AWC2 1192 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 MAP3K14Q99558 947 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 NUP88Q99567 741 aaPredicted RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms