RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ELOA2Q8IYF1 753 aaPredicted RBP14.83□□□□□ -0.04
SPTLC1-201ENST00000262554 CNNM3Q8NE01 707 aa14.83□□□□□ -0.04
SPTLC1-201ENST00000262554 MRFAP1L1Q96HT8 127 aa14.83□□□□□ -0.04
SPTLC1-201ENST00000262554 CLIP2Q9UDT6 1046 aa14.83□□□□□ -0.04
SPTLC1-201ENST00000262554 TUBE1Q9UJT0 475 aa14.83□□□□□ -0.04
SPTLC1-201ENST00000262554 FLT1P17948 1338 aa14.83□□□□□ -0.04
SPTLC1-201ENST00000262554 ALDH1B1P30837 517 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 PDE6BP35913 854 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 TPM4P67936 248 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 GRM4Q14833 912 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 LONRF3Q496Y0 759 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 ZC3H12CQ9C0D7 883 aaKnown RBP14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 SUGT1Q9Y2Z0 365 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 EP400Q96L91 3159 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 USP17L3A6NCW0 530 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 USP17L4A6NCW7 530 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 SMTNL1A8MU46 457 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 RIMBP2O15034 1052 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 RASA1P20936 1047 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 PTGS1P23219 599 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 RHBDL3P58872 404 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 NLRP5P59047 1200 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 GTF2IP78347 998 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 SPECC1Q5M775 1068 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 C16orf86Q6ZW13 317 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 USP17L1Q7RTZ2 530 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 TMX4Q9H1E5 349 aaPredicted RBP14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 KCNF1Q9H3M0 494 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 PARP3Q9Y6F1 533 aa14.82□□□□□ -0.04
SPTLC1-201ENST00000262554 FAM205CA6NFA0 338 aa14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 CALML3P27482 149 aa14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 CDK8P49336 464 aa14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 PNOCQ13519 176 aa14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 CCDC186Q7Z3E2 898 aa14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 METTL16Q86W50 562 aaKnown RBP14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 SLC44A5Q8NCS7 719 aa14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 TNFRSF25Q93038 417 aa14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 SH3GLB2Q9NR46 395 aa14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 BAZ2BQ9UIF8 2168 aaKnown RBP14.81□□□□□ -0.04
SPTLC1-201ENST00000262554 GRIN1Q05586 938 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 NOLC1Q14978 699 aaKnown RBP eCLIP14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 NPY5RQ15761 445 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 EARS2Q5JPH6 523 aaKnown RBP14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 FERMT2Q96AC1 680 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 EYA3Q99504 573 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 STX8Q9UNK0 236 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 COL11A2P13942 1736 aaPredicted RBP14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 POLR2DO15514 142 aaKnown RBP14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 MMP10P09238 476 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 TRAPPC10P48553 1259 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 QSER1Q2KHR3 1735 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 TTC38Q5R3I4 469 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 KANK3Q6NY19 840 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 DPP8Q6V1X1 898 aaPredicted RBP14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 LZTS2Q9BRK4 669 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 CSRNP2Q9H175 543 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 MAD2L2Q9UI95 211 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 DAGLAQ9Y4D2 1042 aa14.8□□□□□ -0.04
SPTLC1-201ENST00000262554 SNED1Q8TER0 1413 aa14.79□□□□□ -0.04
SPTLC1-201ENST00000262554 IKBKBO14920 756 aa14.79□□□□□ -0.04
SPTLC1-201ENST00000262554 OLFM4Q6UX06 510 aa14.79□□□□□ -0.04
SPTLC1-201ENST00000262554 STAG2Q8N3U4 1231 aa14.79□□□□□ -0.04
SPTLC1-201ENST00000262554 NEDD1Q8NHV4 660 aa14.79□□□□□ -0.04
SPTLC1-201ENST00000262554 MASTLQ96GX5 879 aa14.79□□□□□ -0.04
SPTLC1-201ENST00000262554 TMEM47Q9BQJ4 181 aa14.79□□□□□ -0.04
SPTLC1-201ENST00000262554 NRBP1Q9UHY1 535 aa14.79□□□□□ -0.04
SPTLC1-201ENST00000262554 G3V3G9 751 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 POSTNQ15063 836 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 DCAF8Q5TAQ9 597 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 ISM2Q6H9L7 571 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 KIAA1524Q8TCG1 905 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 CCDC34Q96HJ3 373 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 SPTLC3Q9NUV7 552 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 PCDHA5Q9Y5H7 936 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 MYH8P13535 1937 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 TERF1P54274 439 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 MDM2Q00987 491 aaPredicted RBP14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 ZNF174Q15697 407 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 DNTTIP2Q5QJE6 756 aaKnown RBP14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 PIK3AP1Q6ZUJ8 805 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 BLIDQ8IZY5 108 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 SERTAD1Q9UHV2 236 aa14.78□□□□□ -0.04
SPTLC1-201ENST00000262554 PALM3A6NDB9 673 aaPredicted RBP14.77□□□□□ -0.05
SPTLC1-201ENST00000262554 FAM177A1Q8N128 213 aaPredicted RBP14.77□□□□□ -0.05
SPTLC1-201ENST00000262554 CCDC148Q8NFR7 591 aa14.77□□□□□ -0.05
SPTLC1-201ENST00000262554 PYCARDQ9ULZ3 195 aa14.77□□□□□ -0.05
SPTLC1-201ENST00000262554 PCDHA4Q9UN74 947 aa14.77□□□□□ -0.05
SPTLC1-201ENST00000262554 TTF2Q9UNY4 1162 aaKnown RBP14.77□□□□□ -0.05
SPTLC1-201ENST00000262554 R3HCC1Q9Y3T6 440 aaKnown RBP14.77□□□□□ -0.05
SPTLC1-201ENST00000262554 F8W031 263 aaPredicted RBP14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 NEMFO60524 1076 aa14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 ATP2C1P98194 919 aaPredicted RBP14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 PTGDRQ13258 359 aa14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 NOM1Q5C9Z4 860 aaKnown RBP14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 FOXP4Q8IVH2 680 aaPredicted RBP14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 PDILTQ8N807 584 aa14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 GPKOWQ92917 476 aaPredicted RBP eCLIP14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 MTMR7Q9Y216 660 aa14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 FOXN1O15353 648 aa14.76□□□□□ -0.05
SPTLC1-201ENST00000262554 ACTN4O43707 911 aaKnown RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms