RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 VAT1LQ9HCJ6 419 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 ZBTB1Q9Y2K1 713 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 WDR17Q8IZU2 1322 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 CXCR5P32302 372 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 CTSWP56202 376 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 EVX2Q03828 476 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 KRT31Q15323 416 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 ZBTB38Q8NAP3 1195 aaPredicted RBP13.51□□□□□ -0.25
USHBP1-201ENST00000252597 KIFC2Q96AC6 838 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 FAM107BQ9H098 131 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 MAGEC2Q9UBF1 373 aaPredicted RBP13.51□□□□□ -0.25
USHBP1-201ENST00000252597 RRP15Q9Y3B9 282 aaKnown RBP13.51□□□□□ -0.25
USHBP1-201ENST00000252597 KDM3BQ7LBC6 1761 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 RAD21O60216 631 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 SF3A3Q12874 501 aaKnown RBP eCLIP13.51□□□□□ -0.25
USHBP1-201ENST00000252597 MORC3Q14149 939 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 CCDC178Q5BJE1 867 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 CCDC151A5D8V7 595 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 ZNF185O15231 689 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 MFAP3LO75121 409 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 GYPCP04921 128 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 IFNAR1P17181 557 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 STAT6P42226 847 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 NR1I3Q14994 352 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 TTC38Q5R3I4 469 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.5□□□□□ -0.25
USHBP1-201ENST00000252597 CPDO75976 1380 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 ATP2B2Q01814 1243 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 DPYDQ12882 1025 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 KANK3Q6NY19 840 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 DZIP3Q86Y13 1208 aaKnown RBP13.5□□□□□ -0.25
USHBP1-201ENST00000252597 CNGA4Q8IV77 575 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 DEF6Q9H4E7 631 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 ANKZF1Q9H8Y5 726 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 MYO6Q9UM54 1294 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 TACC3Q9Y6A5 838 aa13.5□□□□□ -0.25
USHBP1-201ENST00000252597 GSG1L2A8MUP6 293 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 CACNA1FO60840 1977 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 VEGFAP15692 232 aaPredicted RBP13.49□□□□□ -0.25
USHBP1-201ENST00000252597 TUBGCP6Q96RT7 1819 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 RIPOR2Q9Y4F9 1068 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 CAMTA1Q9Y6Y1 1673 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 COL18A1P39060 1754 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 KCNJ18B7U540 433 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 ACTN4O43707 911 aaKnown RBP13.49□□□□□ -0.25
USHBP1-201ENST00000252597 PPARAQ07869 468 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 KCNJ12Q14500 433 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 IQCA1Q86XH1 822 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 CTCFLQ8NI51 663 aaPredicted RBP13.49□□□□□ -0.25
USHBP1-201ENST00000252597 SMCR8Q8TEV9 937 aaPredicted RBP13.49□□□□□ -0.25
USHBP1-201ENST00000252597 ESR2Q92731 530 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 TANGO6Q9C0B7 1094 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 CPVLQ9H3G5 476 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 SMARCAL1Q9NZC9 954 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 SRPRBQ9Y5M8 271 aaKnown RBP13.49□□□□□ -0.25
USHBP1-201ENST00000252597 IL2RBP14784 551 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 ACTN2P35609 894 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 MTIF2P46199 727 aaKnown RBP13.49□□□□□ -0.25
USHBP1-201ENST00000252597 ERVK-24P63145 666 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 CCDC96Q2M329 555 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 NLRP10Q86W26 655 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 CNNM2Q9H8M5 875 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 BTG4Q9NY30 223 aa13.49□□□□□ -0.25
USHBP1-201ENST00000252597 LUC7L2Q9Y383 392 aaKnown RBP13.49□□□□□ -0.25
USHBP1-201ENST00000252597 UTRNP46939 3433 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 PCCAP05165 728 aaPredicted RBP13.48□□□□□ -0.25
USHBP1-201ENST00000252597 SLC7A5Q01650 507 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 ARID5AQ03989 594 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 PAK1Q13153 545 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 UBE3CQ15386 1083 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 PUM3Q15397 648 aaKnown RBP13.48□□□□□ -0.25
USHBP1-201ENST00000252597 ACBD3Q9H3P7 528 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.48□□□□□ -0.25
USHBP1-201ENST00000252597 TSPY2A6NKD2 308 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 UQCRFS1P1P0C7P4 283 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 BRD3Q15059 726 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 RSRC2Q7L4I2 434 aaKnown RBP13.48□□□□□ -0.25
USHBP1-201ENST00000252597 FCHSD1Q86WN1 690 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 MICALL1Q8N3F8 863 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 IQUBQ8NA54 791 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 HPS3Q969F9 1004 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 ZNHIT6Q9NWK9 470 aaKnown RBP13.48□□□□□ -0.25
USHBP1-201ENST00000252597 EPN1Q9Y6I3 576 aaPredicted RBP13.48□□□□□ -0.25
USHBP1-201ENST00000252597 DUSP10Q9Y6W6 482 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 RFX7Q2KHR2 1363 aa13.48□□□□□ -0.25
USHBP1-201ENST00000252597 USP17L12C9JPN9 530 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 USP17L21D6R901 530 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 ZNF18P17022 549 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 IGHMBP2P38935 993 aaKnown RBP13.47□□□□□ -0.25
USHBP1-201ENST00000252597 UBA7P41226 1012 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 KLK7P49862 253 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 COPB1P53618 953 aaKnown RBP13.47□□□□□ -0.25
USHBP1-201ENST00000252597 C2orf54Q08AI8 447 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 MAGEB6P1A0A0J9YX57 407 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 LRRIQ3A6PVS8 624 aaPredicted RBP13.47□□□□□ -0.25
USHBP1-201ENST00000252597 B4DLN1 442 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 RNF40O75150 1001 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 SSBP05455 408 aaKnown RBP eCLIP13.47□□□□□ -0.25
USHBP1-201ENST00000252597 IDEP14735 1019 aa13.47□□□□□ -0.25
USHBP1-201ENST00000252597 MDM2Q00987 491 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms