RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 Nol7Q9D7Z3 254 aaKnown RBP12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 EhhadhQ9DBM2 718 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Pdcd6ipQ9WU78 869 aaKnown RBP12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Prss40A6H6T1 365 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Gna11P21278 359 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Kif22Q3V300 660 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 TxlnaQ6PAM1 554 aaKnown RBP12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Bbs9Q811G0 885 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 SltmQ8CH25 1031 aaKnown RBP12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Nek9Q8K1R7 984 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Vps37cQ8R105 352 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Cd248Q91V98 765 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Trmt44Q9D2Q2 713 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Zc3h13E9Q784 1729 aaKnown RBP12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Lrrc6O88978 473 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Cc2d1bQ8BRN9 848 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Terb1Q8C0V1 768 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Exoc1Q8R3S6 894 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Tubgcp2Q921G8 905 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ccdc105Q9D4K7 499 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Lztfl1Q9JHQ5 299 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Nap1l5Q9JJF0 156 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Pkd2l2Q9JLG4 621 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ccnt1Q9QWV9 724 aaKnown RBP12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Cbx8Q9QXV1 362 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 GdaQ9R111 454 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 C3P01027 1663 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Med23Q80YQ2 1367 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Pald1P70261 859 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Nbr1P97432 988 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ift88Q61371 824 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Phf23Q8BSN5 401 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Kiaa1524Q8BWY9 907 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Cnpy3Q9DAU1 276 aa12.18□□□□□ -0.46
Msh3-201ENSMUST00000022220 Col20a1Q923P0 1320 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Pip4k2aO70172 405 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Arhgef2Q60875 985 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Cdc37Q61081 379 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Kif1bpQ6ZPU9 617 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Znf526Q8BI66 675 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Slc27a3O88561 667 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 DnttP09838 530 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Foxp1P58462 705 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Lrrfip1Q3UZ39 729 aaKnown RBP12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ankrd63A2ARS0 390 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Acbd5Q5XG73 508 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Sestd1Q80UK0 696 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ehd2Q8BH64 543 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Strip1Q8C079 837 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Lrrd1Q8C0R9 853 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Cd209bQ8CJ91 325 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Cgref1Q8R1U2 281 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Yeats4Q9CR11 227 aaKnown RBP12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Trmt112Q9DCG9 125 aa12.17□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ddx49Q4FZF3 480 aaKnown RBP12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ddx31Q6NZQ2 687 aaKnown RBP12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Slc44a1Q6X893 653 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Jade2Q6ZQF7 829 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Gpaa1Q9WTK3 621 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Cpb1B2RS76 415 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Pagr1bF6V0H0 108 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Vmn2r68L7N2B3 851 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Zfpm1O35615 995 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 LtkP08923 888 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Pafah1b1P63005 410 aaKnown RBP12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Lig3P97386 1015 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ppp1r7Q3UM45 361 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Gpbp1Q6NXH3 473 aaKnown RBP12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Gpr101Q80T62 511 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ddx10Q80Y44 875 aaKnown RBP12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Tmem179Q8BHH9 233 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ccdc186Q8C9S4 917 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Pagr1aQ99L02 253 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Tfap4Q9JIZ5 338 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Znf541Q0GGX2 1363 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 SsbP32067 415 aaKnown RBP12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 MaeaQ4VC33 396 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Ovgp1Q62010 721 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 PdiltQ9DAN1 588 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Kcnq5Q9JK45 933 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Uchl5Q9WUP7 329 aa12.16□□□□□ -0.46
Msh3-201ENSMUST00000022220 Rgs12Q8CGE9 1381 aa12.15□□□□□ -0.46
Msh3-201ENSMUST00000022220 Apol7aB2RT54 418 aa12.15□□□□□ -0.46
Msh3-201ENSMUST00000022220 Gm38392E9Q2A2 434 aa12.15□□□□□ -0.46
Msh3-201ENSMUST00000022220 Gm5624F6ZZG8 207 aa12.15□□□□□ -0.46
Msh3-201ENSMUST00000022220 Kctd1Q5M956 257 aa12.15□□□□□ -0.46
Msh3-201ENSMUST00000022220 Mkrn1Q9QXP6 481 aa12.15□□□□□ -0.46
Msh3-201ENSMUST00000022220 Rgs22G3UYX5 1258 aa12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Mdh1P14152 334 aa12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Mcm5P49718 733 aa12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Fam107bQ3TGF2 131 aa12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Hps6Q8BLY7 805 aa12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Hexim1Q8R409 356 aaKnown RBP12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Krt79Q8VED5 531 aa12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Krtap5-3Q9D226 196 aa12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Wdr64Q9D565 1086 aa12.15□□□□□ -0.47
Msh3-201ENSMUST00000022220 Cnbd1B1AWM0 430 aa12.14□□□□□ -0.47
Msh3-201ENSMUST00000022220 Vps33bP59016 617 aa12.14□□□□□ -0.47
Msh3-201ENSMUST00000022220 Snap25P60879 206 aa12.14□□□□□ -0.47
Msh3-201ENSMUST00000022220 Mcm7Q61881 719 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 22,080 RNA–protein pairs in 16.5 ms