RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	TGL1	P34163	548 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	TOD6	P34219	525 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	BMH2	P34730	273 aa	Known RBP	4.24	□□□□□ -1.73
UBP6	YFR010W	CTF13	P35203	478 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	EMC3	P36039	253 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	ERT1	P38140	529 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	RFC5	P38251	354 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	PNT1	P38969	423 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	PSD1	P39006	500 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	FTR1	P40088	404 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	ALK1	P43633	760 aa	Known RBP	4.24	□□□□□ -1.73
UBP6	YFR010W	SIP4	P46954	829 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	LCL3	P53153	274 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	BRE5	P53741	515 aa	Known RBP	4.24	□□□□□ -1.73
UBP6	YFR010W	GPD1	Q00055	391 aa	Known RBP	4.24	□□□□□ -1.73
UBP6	YFR010W	MAK10	Q02197	733 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	MSC3	Q05812	728 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	ECM7	Q06200	448 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	FMP45	Q07651	309 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	CTI6	Q08923	506 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	HUA2	Q12134	243 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	PSF3	Q12146	194 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	RPN5	Q12250	445 aa	Known RBP	4.24	□□□□□ -1.73
UBP6	YFR010W	SVS1	Q12254	260 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	RBD2	Q12270	262 aa		4.24	□□□□□ -1.73
UBP6	YFR010W	SUI3	P09064	285 aa	Known RBP	4.23	□□□□□ -1.73
UBP6	YFR010W	PRB1	P09232	635 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	MSS116	P15424	664 aa	Known RBP	4.23	□□□□□ -1.73
UBP6	YFR010W	PER1	P25625	357 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	SEC65	P29478	273 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	MEI5	P32489	222 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	STV1	P37296	890 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	UGA2	P38067	497 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	FLR1	P38124	548 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	KEL1	P38853	1164 aa	Known RBP	4.23	□□□□□ -1.73
UBP6	YFR010W	STT3	P39007	718 aa	Known RBP	4.23	□□□□□ -1.73
UBP6	YFR010W	YIL089W	P40500	205 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	PRM2	P40534	656 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	ENP2	P48234	707 aa	Known RBP	4.23	□□□□□ -1.73
UBP6	YFR010W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
UBP6	YFR010W	YSA1	Q01976	231 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	SMA1	Q02651	245 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	RRN11	Q04712	507 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	RTN1	Q04947	295 aa	Known RBP	4.23	□□□□□ -1.73
UBP6	YFR010W	SSQ1	Q05931	657 aa	Predicted RBP	4.23	□□□□□ -1.73
UBP6	YFR010W	CRN1	Q06440	651 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	SLK19	Q08581	821 aa	Known RBP	4.23	□□□□□ -1.73
UBP6	YFR010W	YBR126W-A	Q8TGU7	68 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	YRF1-4	O13559	1382 aa		4.23	□□□□□ -1.73
UBP6	YFR010W	RPS9A	O13516	197 aa	Known RBP	4.22	□□□□□ -1.73
UBP6	YFR010W	RPS9B	P05755	195 aa	Known RBP	4.22	□□□□□ -1.73
UBP6	YFR010W	CDC42	P19073	191 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
UBP6	YFR010W	CPR2	P23285	205 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	CAP1	P28495	268 aa	Known RBP	4.22	□□□□□ -1.73
UBP6	YFR010W	HXT4	P32467	576 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	CDC12	P32468	407 aa	Known RBP	4.22	□□□□□ -1.73
UBP6	YFR010W	SLA2	P33338	968 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	YKR018C	P36114	725 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	MSR1	P38714	643 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	YHR054C	P38780	354 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	MNL1	P38888	796 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	SMF1	P38925	575 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	YJR061W	P40355	935 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	MET18	P40469	1032 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	UBC9	P50623	157 aa	Predicted RBP	4.22	□□□□□ -1.73
UBP6	YFR010W	PSP1	P50896	841 aa	Known RBP	4.22	□□□□□ -1.73
UBP6	YFR010W	ALT2	P52892	507 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	MNT4	P53745	580 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	MRPS17	Q03246	237 aa	Predicted RBP	4.22	□□□□□ -1.73
UBP6	YFR010W	ABZ2	Q03266	374 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	EFR3	Q03653	782 aa	Known RBP	4.22	□□□□□ -1.73
UBP6	YFR010W	RSM24	Q03976	319 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	BOP2	Q06150	570 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	TCO89	Q08921	799 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	ACM1	Q08981	209 aa		4.22	□□□□□ -1.73
UBP6	YFR010W	GAL10	P04397	699 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	ARG80	P07249	177 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	DAP2	P18962	818 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	CLB3	P24870	427 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	EMC1	P25574	760 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	YCR051W	P25631	222 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	RPC82	P32349	654 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	PTR2	P32901	601 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	MRPL36	P36531	177 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	SIP3	P38717	1229 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	FLC2	P39719	783 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	MTW1	P39731	289 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	YEL057C	P39983	233 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	IRC5	P43610	853 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	ARC1	P46672	376 aa	Known RBP	4.21	□□□□□ -1.73
UBP6	YFR010W	YGL242C	P53066	181 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	MTD1	Q02046	320 aa	Known RBP	4.21	□□□□□ -1.73
UBP6	YFR010W	GCN5	Q03330	439 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	ROT1	Q03691	256 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	SEG1	Q04279	960 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	SKG3	Q06315	1026 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	IWR1	Q07532	353 aa	Predicted RBP	4.21	□□□□□ -1.73
UBP6	YFR010W	LOT6	Q07923	191 aa		4.21	□□□□□ -1.73
UBP6	YFR010W	RCN2	Q12044	265 aa		4.21	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms