RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 EEPD1Q7L9B9 569 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 FAM114A1Q8IWE2 563 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 GABPB2Q8TAK5 448 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 NEK1Q96PY6 1258 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 STIM2Q9P246 746 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L15C9J2P7 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L13C9JLJ4 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L11C9JVI0 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L18D6R9N7 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L22D6RA61 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L17D6RBQ6 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L19D6RCP7 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L20D6RJB6 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 PLSCR1O15162 318 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 DAPK3O43293 454 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 ZWINTO95229 277 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 RBM25P49756 843 aaKnown RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L24Q0WX57 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 HAUS6Q7Z4H7 955 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 IWS1Q96ST2 819 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 GZF1Q9H116 711 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 CRKP46108 304 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 CCT2P78371 535 aaKnown RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 TFCP2Q12800 502 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 PARP2Q9UGN5 583 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 SHTN1A0MZ66 631 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 SCARF1Q14162 830 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 VEPH1Q14D04 833 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 CTNNBL1Q8WYA6 563 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 TAF4BQ92750 862 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 TDRD3Q9H7E2 651 aaKnown RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 FNDC3AQ9Y2H6 1198 aaKnown RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 FRMD4BQ9Y2L6 1034 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L12C9JPN9 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 USP17L21D6R901 530 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 GPATCH4Q5T3I0 446 aaKnown RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 SDE2Q6IQ49 451 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 KANK3Q6NY19 840 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 PCSK9Q8NBP7 692 aaKnown RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 CCDC114Q96M63 670 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 APOL6Q9BWW8 343 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 TBC1D2Q9BYX2 928 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 GCC2Q8IWJ2 1684 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 SAMD9LQ8IVG5 1584 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 OPA1O60313 960 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 KRT19P08727 400 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 AMPD2Q01433 879 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 TFAP4Q01664 338 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 E2F5Q15329 346 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 RNF219Q5W0B1 726 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 DAAM2Q86T65 1068 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 CCDC65Q8IXS2 484 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 NLRP7Q8WX94 980 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 ZNF594Q96JF6 807 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 SYT17Q9BSW7 474 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 ALG1Q9BT22 464 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 TMEM39AQ9NV64 488 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 RABGAP1Q9Y3P9 1069 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 KIAA0100Q14667 2235 aaKnown RBP5.63□□□□□ -1.51
SCN1A-218ENST00000640036 KIF24Q5T7B8 1368 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 TMEM232C9JQI7 657 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 NNMTP40261 264 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 BFSP2Q13515 415 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 GPRC5AQ8NFJ5 357 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 YME1L1Q96TA2 773 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 ATP8B3O60423 1300 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 KLF18A0A0U1RQI7 1052 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 TBC1D8O95759 1140 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 RPL13P26373 211 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 STAT6P42226 847 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 MTIF2P46199 727 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 ARPP19P56211 112 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 MIS18BP1Q6P0N0 1132 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 DTHD1Q6ZMT9 781 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 RSRC2Q7L4I2 434 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 NECAB2Q7Z6G3 386 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 URB1O60287 2271 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 ERCC6L2Q5T890 1561 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 ROBO2Q9HCK4 1378 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 PATL2C9JE40 543 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 MSCO60682 206 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 STAG3L1P0CL83 205 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 BMP3P12645 472 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 MCM3P25205 808 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 POLR2BP30876 1174 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 YWHAEP62258 255 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 LIN9Q5TKA1 542 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 SPICE1Q8N0Z3 855 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 APPBP2Q92624 585 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 C19orf81C9J6K1 198 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 UBE2Q2LH0YL09 131 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 SH3BP5O60239 455 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 TBC1D9BQ66K14 1250 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 RSBN1LQ6PCB5 846 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 MIER3Q7Z3K6 550 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 SREK1Q8WXA9 508 aaKnown RBP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 UPF1Q92900 1129 aaKnown RBP eCLIP5.62□□□□□ -1.51
SCN1A-218ENST00000640036 ATP6V0A1Q93050 837 aa5.62□□□□□ -1.51
SCN1A-218ENST00000640036 KIF9Q9HAQ2 790 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms