RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 MORN1Q5T089 497 aa21.75■■□□□ 1.07
CIITA-215ENST00000637439 GDF15Q99988 308 aa21.75■■□□□ 1.07
CIITA-215ENST00000637439 PORCNQ9H237 461 aa21.75■■□□□ 1.07
CIITA-215ENST00000637439 CACNB2Q08289 660 aaPredicted RBP21.74■■□□□ 1.07
CIITA-215ENST00000637439 CERKLQ49MI3 558 aaPredicted RBP21.74■■□□□ 1.07
CIITA-215ENST00000637439 APBA2Q99767 749 aa21.74■■□□□ 1.07
CIITA-215ENST00000637439 KIAA1683Q9H0B3 1180 aa21.74■■□□□ 1.07
CIITA-215ENST00000637439 CABP5Q9NP86 173 aa21.74■■□□□ 1.07
CIITA-215ENST00000637439 RAB3GAP1Q15042 981 aa21.73■■□□□ 1.07
CIITA-215ENST00000637439 ABCB5Q2M3G0 1257 aa21.73■■□□□ 1.07
CIITA-215ENST00000637439 HSP90AB4PQ58FF6 505 aa21.73■■□□□ 1.07
CIITA-215ENST00000637439 CEP85Q6P2H3 762 aa21.73■■□□□ 1.07
CIITA-215ENST00000637439 RLBP1P12271 317 aa21.72■■□□□ 1.07
CIITA-215ENST00000637439 HNRNPUQ00839 825 aaKnown RBP eCLIP21.72■■□□□ 1.07
CIITA-215ENST00000637439 MAP2K5Q13163 448 aa21.72■■□□□ 1.07
CIITA-215ENST00000637439 TTF1Q15361 905 aaPredicted RBP21.72■■□□□ 1.07
CIITA-215ENST00000637439 ZYXQ15942 572 aaKnown RBP21.72■■□□□ 1.07
CIITA-215ENST00000637439 CATSPERGQ6ZRH7 1159 aa21.72■■□□□ 1.07
CIITA-215ENST00000637439 AACSQ86V21 672 aa21.72■■□□□ 1.07
CIITA-215ENST00000637439 ANTXR1Q9H6X2 564 aa21.72■■□□□ 1.07
CIITA-215ENST00000637439 ZMYND8Q9ULU4 1186 aaPredicted RBP21.72■■□□□ 1.07
CIITA-215ENST00000637439 NDUFB9Q9Y6M9 179 aa21.71■■□□□ 1.07
CIITA-215ENST00000637439 SOX1O00570 391 aaPredicted RBP21.7■■□□□ 1.06
CIITA-215ENST00000637439 CCL14Q16627 93 aa21.7■■□□□ 1.06
CIITA-215ENST00000637439 GPR153Q6NV75 609 aa21.7■■□□□ 1.06
CIITA-215ENST00000637439 POTEEQ6S8J3 1075 aa21.7■■□□□ 1.06
CIITA-215ENST00000637439 LBX2Q6XYB7 198 aa21.7■■□□□ 1.06
CIITA-215ENST00000637439 EDC3Q96F86 508 aaKnown RBP21.7■■□□□ 1.06
CIITA-215ENST00000637439 EXOC6BQ9Y2D4 811 aa21.7■■□□□ 1.06
CIITA-215ENST00000637439 MAGEB6P1A0A0J9YX57 407 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 SLC15A5A6NIM6 579 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 CNMDO75829 334 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 POLR3DP05423 398 aaPredicted RBP21.69■■□□□ 1.06
CIITA-215ENST00000637439 COL6A1P12109 1028 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 VCAM1P19320 739 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 CCND3P30281 292 aaPredicted RBP21.69■■□□□ 1.06
CIITA-215ENST00000637439 MFSD14CQ5VZR4 134 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 LHX8Q68G74 356 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 LRCH3Q96II8 777 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 RIOK1Q9BRS2 568 aaKnown RBP21.69■■□□□ 1.06
CIITA-215ENST00000637439 IVNS1ABPQ9Y6Y0 642 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 PFASO15067 1338 aa21.69■■□□□ 1.06
CIITA-215ENST00000637439 SYN1P17600 705 aa21.68■■□□□ 1.06
CIITA-215ENST00000637439 SHMT1P34896 483 aa21.68■■□□□ 1.06
CIITA-215ENST00000637439 PLCD1P51178 756 aa21.68■■□□□ 1.06
CIITA-215ENST00000637439 WDR78Q5VTH9 848 aa21.68■■□□□ 1.06
CIITA-215ENST00000637439 ACER1Q8TDN7 264 aa21.68■■□□□ 1.06
CIITA-215ENST00000637439 CRNKL1Q9BZJ0 848 aaKnown RBP21.68■■□□□ 1.06
CIITA-215ENST00000637439 LAMA3Q16787 3333 aa21.68■■□□□ 1.06
CIITA-215ENST00000637439 PTPREP23469 700 aa21.67■■□□□ 1.06
CIITA-215ENST00000637439 MAGEA10P43363 369 aaPredicted RBP21.67■■□□□ 1.06
CIITA-215ENST00000637439 SLC9C2Q5TAH2 1124 aa21.67■■□□□ 1.06
CIITA-215ENST00000637439 MSCO60682 206 aa21.66■■□□□ 1.06
CIITA-215ENST00000637439 HOXC6P09630 235 aa21.66■■□□□ 1.06
CIITA-215ENST00000637439 LRIT3Q3SXY7 679 aa21.66■■□□□ 1.06
CIITA-215ENST00000637439 TDHQ8IZJ6 230 aa21.66■■□□□ 1.06
CIITA-215ENST00000637439 CLASRPQ8N2M8 674 aaKnown RBP21.66■■□□□ 1.06
CIITA-215ENST00000637439 RHPN1Q8TCX5 695 aa21.66■■□□□ 1.06
CIITA-215ENST00000637439 RPAP3Q9H6T3 665 aaPredicted RBP21.66■■□□□ 1.06
CIITA-215ENST00000637439 NAV1Q8NEY1 1877 aa21.66■■□□□ 1.06
CIITA-215ENST00000637439 MS4A1P11836 297 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 PDE6AP16499 860 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 ATP2B2Q01814 1243 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 GABPAQ06546 454 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 GRB14Q14449 540 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.65■■□□□ 1.06
CIITA-215ENST00000637439 IL1RAPL2Q9NP60 686 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 MCM9Q9NXL9 1143 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 HOXC10Q9NYD6 342 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 BTBD7Q9P203 1132 aa21.65■■□□□ 1.06
CIITA-215ENST00000637439 SPDYE16A6NNV3 312 aaPredicted RBP21.64■■□□□ 1.05
CIITA-215ENST00000637439 GUCY1A2P33402 732 aa21.64■■□□□ 1.05
CIITA-215ENST00000637439 SEPT2Q15019 361 aa21.64■■□□□ 1.05
CIITA-215ENST00000637439 SLC17A8Q8NDX2 589 aa21.64■■□□□ 1.05
CIITA-215ENST00000637439 KIF1BPQ96EK5 621 aa21.64■■□□□ 1.05
CIITA-215ENST00000637439 UBE2OQ9C0C9 1292 aaKnown RBP21.64■■□□□ 1.05
CIITA-215ENST00000637439 MPHOSPH10O00566 681 aaKnown RBP21.63■■□□□ 1.05
CIITA-215ENST00000637439 COG2Q14746 738 aa21.63■■□□□ 1.05
CIITA-215ENST00000637439 LRRC26Q2I0M4 334 aa21.63■■□□□ 1.05
CIITA-215ENST00000637439 PANK1Q8TE04 598 aa21.63■■□□□ 1.05
CIITA-215ENST00000637439 FLRT1Q9NZU1 646 aa21.63■■□□□ 1.05
CIITA-215ENST00000637439 DDX20Q9UHI6 824 aaKnown RBP21.63■■□□□ 1.05
CIITA-215ENST00000637439 FRMPD3Q5JV73 1810 aa21.63■■□□□ 1.05
CIITA-215ENST00000637439 ZNF532Q9HCE3 1301 aa21.62■■□□□ 1.05
CIITA-215ENST00000637439 STRNO43815 780 aa21.62■■□□□ 1.05
CIITA-215ENST00000637439 HMMRO75330 724 aa21.62■■□□□ 1.05
CIITA-215ENST00000637439 IFIT2P09913 472 aaKnown RBP21.62■■□□□ 1.05
CIITA-215ENST00000637439 RPAP2Q8IXW5 612 aaPredicted RBP21.62■■□□□ 1.05
CIITA-215ENST00000637439 SWAP70Q9UH65 585 aa21.62■■□□□ 1.05
CIITA-215ENST00000637439 GOLIM4O00461 696 aa21.61■■□□□ 1.05
CIITA-215ENST00000637439 CNGA1P29973 690 aa21.61■■□□□ 1.05
CIITA-215ENST00000637439 TMEM179Q6ZVK1 233 aa21.61■■□□□ 1.05
CIITA-215ENST00000637439 MB21D1Q8N884 522 aa21.61■■□□□ 1.05
CIITA-215ENST00000637439 LPAR1Q92633 364 aa21.61■■□□□ 1.05
CIITA-215ENST00000637439 DNAJC2Q99543 621 aaKnown RBP21.61■■□□□ 1.05
CIITA-215ENST00000637439 TANGO6Q9C0B7 1094 aa21.61■■□□□ 1.05
CIITA-215ENST00000637439 DCP1AQ9NPI6 582 aaPredicted RBP21.61■■□□□ 1.05
CIITA-215ENST00000637439 TCRBV5S4A2TA0A5A2 114 aa21.6■■□□□ 1.05
CIITA-215ENST00000637439 DPP9Q86TI2 863 aa21.6■■□□□ 1.05
CIITA-215ENST00000637439 DEFB123Q8N688 67 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms