RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PABPC4Q13310 644 aaKnown RBP eCLIP24.67■■□□□ 1.543e-6■■■■□ 26.6
CLN3-240ENST00000631023 STK11IPQ8N1F8 1099 aa24.67■■□□□ 1.54
CLN3-240ENST00000631023 AKR1B1P15121 316 aa24.66■■□□□ 1.54
CLN3-240ENST00000631023 GUCY1A2P33402 732 aa24.66■■□□□ 1.54
CLN3-240ENST00000631023 USP14P54578 494 aa24.66■■□□□ 1.54
CLN3-240ENST00000631023 USP17L2Q6R6M4 530 aa24.66■■□□□ 1.54
CLN3-240ENST00000631023 FGAP02671 866 aa24.65■■□□□ 1.54
CLN3-240ENST00000631023 ZNF444Q8N0Y2 327 aaPredicted RBP24.65■■□□□ 1.54
CLN3-240ENST00000631023 RUFY2Q8WXA3 655 aa24.65■■□□□ 1.54
CLN3-240ENST00000631023 PPP4R2Q9NY27 417 aa24.65■■□□□ 1.54
CLN3-240ENST00000631023 PNMA3Q9UL41 463 aa24.65■■□□□ 1.54
CLN3-240ENST00000631023 SP3Q02447 781 aa24.64■■□□□ 1.54
CLN3-240ENST00000631023 KIAA1683Q9H0B3 1180 aa24.64■■□□□ 1.54
CLN3-240ENST00000631023 TREML2Q5T2D2 321 aa24.63■■□□□ 1.53
CLN3-240ENST00000631023 TNS4Q8IZW8 715 aa24.63■■□□□ 1.53
CLN3-240ENST00000631023 KANSL2Q9H9L4 492 aa24.63■■□□□ 1.53
CLN3-240ENST00000631023 ZMYM6O95789 1325 aa24.63■■□□□ 1.53
CLN3-240ENST00000631023 RASA1P20936 1047 aa24.63■■□□□ 1.53
CLN3-240ENST00000631023 OSBPP22059 807 aa24.63■■□□□ 1.53
CLN3-240ENST00000631023 ERO1AQ96HE7 468 aa24.63■■□□□ 1.53
CLN3-240ENST00000631023 ARHGEF10LQ9HCE6 1279 aa24.63■■□□□ 1.53
CLN3-240ENST00000631023 CYP2C8P10632 490 aa24.62■■□□□ 1.53
CLN3-240ENST00000631023 CHMLP26374 656 aa24.62■■□□□ 1.53
CLN3-240ENST00000631023 ICA1Q05084 483 aa24.62■■□□□ 1.53
CLN3-240ENST00000631023 ACER1Q8TDN7 264 aa24.62■■□□□ 1.53
CLN3-240ENST00000631023 SMCR8Q8TEV9 937 aaPredicted RBP24.62■■□□□ 1.53
CLN3-240ENST00000631023 SH2D4AQ9H788 454 aa24.62■■□□□ 1.53
CLN3-240ENST00000631023 ANAPC4Q9UJX5 808 aa24.62■■□□□ 1.53
CLN3-240ENST00000631023 GREB1LQ9C091 1923 aaPredicted RBP24.62■■□□□ 1.53
CLN3-240ENST00000631023 MYH4Q9Y623 1939 aa24.62■■□□□ 1.53
CLN3-240ENST00000631023 DGKZQ13574 1117 aa24.61■■□□□ 1.53
CLN3-240ENST00000631023 EMILIN3Q9NT22 766 aa24.61■■□□□ 1.53
CLN3-240ENST00000631023 RAD50Q92878 1312 aa24.61■■□□□ 1.53
CLN3-240ENST00000631023 PRDM1O75626 825 aa24.6■■□□□ 1.53
CLN3-240ENST00000631023 HOXA7P31268 230 aaPredicted RBP24.6■■□□□ 1.53
CLN3-240ENST00000631023 ARHGEF6Q15052 776 aa24.6■■□□□ 1.53
CLN3-240ENST00000631023 ZYXQ15942 572 aaKnown RBP24.6■■□□□ 1.53
CLN3-240ENST00000631023 C17orf99Q6UX52 265 aa24.6■■□□□ 1.53
CLN3-240ENST00000631023 CTU1Q7Z7A3 348 aaKnown RBP24.6■■□□□ 1.53
CLN3-240ENST00000631023 C12orf42Q96LP6 360 aa24.6■■□□□ 1.53
CLN3-240ENST00000631023 CTDSPL2Q05D32 466 aa24.59■■□□□ 1.53
CLN3-240ENST00000631023 BMP2KLQ5H9B9 411 aa24.59■■□□□ 1.53
CLN3-240ENST00000631023 DSCC1Q9BVC3 393 aa24.59■■□□□ 1.53
CLN3-240ENST00000631023 CPA4Q9UI42 421 aa24.59■■□□□ 1.53
CLN3-240ENST00000631023 IRX3P78415 501 aaPredicted RBP24.59■■□□□ 1.53
CLN3-240ENST00000631023 KIF22Q14807 665 aa24.59■■□□□ 1.53
CLN3-240ENST00000631023 TSPY3P0CV98 308 aa24.58■■□□□ 1.52
CLN3-240ENST00000631023 TSPY8P0CW00 308 aa24.58■■□□□ 1.52
CLN3-240ENST00000631023 ATP2B2Q01814 1243 aa24.58■■□□□ 1.52
CLN3-240ENST00000631023 SKAP1Q86WV1 359 aa24.58■■□□□ 1.52
CLN3-240ENST00000631023 ASCC2Q9H1I8 757 aaPredicted RBP24.58■■□□□ 1.52
CLN3-240ENST00000631023 CTNNA3Q9UI47 895 aa24.58■■□□□ 1.52
CLN3-240ENST00000631023 TMX2Q9Y320 296 aa24.58■■□□□ 1.52
CLN3-240ENST00000631023 ADGRA2Q96PE1 1338 aa24.58■■□□□ 1.52
CLN3-240ENST00000631023 LAMA4Q16363 1823 aa24.57■■□□□ 1.52
CLN3-240ENST00000631023 A0A1W2PRG0 241 aa24.57■■□□□ 1.52
CLN3-240ENST00000631023 EEF2P13639 858 aaKnown RBP24.57■■□□□ 1.52
CLN3-240ENST00000631023 SIAH1Q8IUQ4 282 aa24.57■■□□□ 1.52
CLN3-240ENST00000631023 MGAMO43451 1857 aa24.57■■□□□ 1.52
CLN3-240ENST00000631023 ZNF213O14771 459 aa24.56■■□□□ 1.52
CLN3-240ENST00000631023 GCLCP48506 637 aaPredicted RBP24.56■■□□□ 1.52
CLN3-240ENST00000631023 PKN2Q16513 984 aaKnown RBP24.56■■□□□ 1.52
CLN3-240ENST00000631023 CLEC10AQ8IUN9 316 aa24.56■■□□□ 1.52
CLN3-240ENST00000631023 CD99L2Q8TCZ2 262 aa24.56■■□□□ 1.52
CLN3-240ENST00000631023 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.56■■□□□ 1.52
CLN3-240ENST00000631023 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.56■■□□□ 1.52
CLN3-240ENST00000631023 USP17L15C9J2P7 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 USP17L13C9JLJ4 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 USP17L11C9JVI0 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 USP17L18D6R9N7 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 USP17L22D6RA61 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 USP17L17D6RBQ6 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 USP17L19D6RCP7 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 USP17L20D6RJB6 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 BCRP11274 1271 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 PCP11498 1178 aaKnown RBP24.55■■□□□ 1.52
CLN3-240ENST00000631023 VCAM1P19320 739 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 TFAP4Q01664 338 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 USP17L24Q0WX57 530 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 NEDD1Q8NHV4 660 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 LPAR1Q92633 364 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 NYAP2Q9P242 653 aa24.55■■□□□ 1.52
CLN3-240ENST00000631023 ORC4O43929 436 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 FGRP09769 529 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 HAND2P61296 217 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 LACTBP83111 547 aaPredicted RBP24.54■■□□□ 1.52
CLN3-240ENST00000631023 PPP4R3BQ5MIZ7 849 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 RNF41Q9H4P4 317 aaPredicted RBP24.54■■□□□ 1.52
CLN3-240ENST00000631023 GOPCQ9HD26 462 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 TOMM22Q9NS69 142 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 TSPY2A6NKD2 308 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 MFSD6Q6ZSS7 791 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 MCOLN1Q9GZU1 580 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 IL25Q9H293 177 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 VCPKMTQ9H867 229 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 EFCC1Q9HA90 598 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 TRIM17Q9Y577 477 aa24.54■■□□□ 1.52
CLN3-240ENST00000631023 DOCK3Q8IZD9 2030 aa24.53■■□□□ 1.52
CLN3-240ENST00000631023 PLIN4Q96Q06 1357 aa24.53■■□□□ 1.52
CLN3-240ENST00000631023 SGSM2O43147 1006 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms