RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 FESP07332 822 aa8.88□□□□□ -0.99
VPS11-209ENST00000622309 ACCSLQ4AC99 568 aa8.88□□□□□ -0.99
VPS11-209ENST00000622309 LRRC59Q96AG4 307 aaKnown RBP8.88□□□□□ -0.99
VPS11-209ENST00000622309 TCEANC2Q96MN5 208 aa8.88□□□□□ -0.99
VPS11-209ENST00000622309 MIS18AQ9NYP9 233 aa8.88□□□□□ -0.99
VPS11-209ENST00000622309 IMPDH2P12268 514 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 IL13P35225 146 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 ATP1A2P50993 1020 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 SLMAPQ14BN4 828 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 OLFM4Q6UX06 510 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 FMR1NBQ8N0W7 255 aaPredicted RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 ZNF473Q8WTR7 871 aaKnown RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 TSC22D3Q99576 134 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 TSGA10Q9BZW7 698 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 LRRC27Q9C0I9 530 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 SIL1Q9H173 461 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 EPN3Q9H201 632 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 PAPOLBQ9NRJ5 636 aaKnown RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 SMAPO00193 183 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 JAK2O60674 1132 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 MTF1Q14872 753 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 LRRC23Q53EV4 343 aaPredicted RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 MSL1Q68DK7 614 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 CWF19L1Q69YN2 538 aaKnown RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 NCAPH2Q6IBW4 605 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 CCDC70Q6NSX1 233 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 ARHGEF25Q86VW2 580 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 NCAPG2Q86XI2 1143 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 USP28Q96RU2 1077 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 SPOCK3Q9BQ16 436 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 CORO1CQ9ULV4 474 aaPredicted RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 NRXN3Q9Y4C0 1643 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 MAP2P11137 1827 aaKnown RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 ZMYND10O75800 440 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 STK10O94804 968 aaKnown RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 PARNO95453 639 aaKnown RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 PYGBP11216 843 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 SKOR1P84550 965 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 PTH1RQ03431 593 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 USP4Q13107 963 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 GNPTABQ3T906 1256 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 SPECC1LQ69YQ0 1117 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 BRINP3Q76B58 766 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 MYLK4Q86YV6 388 aaPredicted RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 TC2NQ8N9U0 490 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 WDR70Q9NW82 654 aa8.87□□□□□ -0.99
VPS11-209ENST00000622309 ZC3H4Q9UPT8 1303 aaKnown RBP8.87□□□□□ -0.99
VPS11-209ENST00000622309 GOLGA6L10A6NI86 522 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 SMIM24O75264 130 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 SMNDC1O75940 238 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS11-209ENST00000622309 FERP16591 822 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 PUS10Q3MIT2 529 aaKnown RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 EDC4Q6P2E9 1401 aaKnown RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 ARHGAP22Q7Z5H3 698 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 LTV1Q96GA3 475 aaPredicted RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 ALS2CR12Q96Q35 445 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 ARPC5LQ9BPX5 153 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 PAGR1Q9BTK6 254 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 TBC1D2BQ9UPU7 963 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 ADGRG1Q9Y653 693 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 SOWAHDA6NJG2 315 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 ATP2C2O75185 946 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 OATP04181 439 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 NBPF7P0C2Y1 421 aaPredicted RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 EIF2S2P20042 333 aaKnown RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 TPP2P29144 1249 aaPredicted RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 LSP1P33241 339 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 CCT4P50991 539 aaKnown RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 NDUFA8P51970 172 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 ROR2Q01974 943 aaKnown RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 DBN1Q16643 649 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 HDGFL1Q5TGJ6 251 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 ATL3Q6DD88 541 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 SND1Q7KZF4 910 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS11-209ENST00000622309 MCM10Q7L590 875 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 GSPT2Q8IYD1 628 aaKnown RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 FAM81AQ8TBF8 368 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 STAMBPL1Q96FJ0 436 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 RABL2BQ9UNT1 228 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 NUB1Q9Y5A7 615 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 PCDHGC5Q9Y5F6 944 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 ADAMTS13Q76LX8 1427 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 MYO1BO43795 1136 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 PDIA5Q14554 519 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 TAF4BQ92750 862 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 CCT8L2Q96SF2 557 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 CDC5LQ99459 802 aaKnown RBP8.86□□□□□ -0.99
VPS11-209ENST00000622309 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS11-209ENST00000622309 NOD2Q9HC29 1040 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 GGA2Q9UJY4 613 aa8.86□□□□□ -0.99
VPS11-209ENST00000622309 ATP7BP35670 1465 aa8.85□□□□□ -0.99
VPS11-209ENST00000622309 CPSF1Q10570 1443 aaKnown RBP8.85□□□□□ -0.99
VPS11-209ENST00000622309 PNPLA6Q8IY17 1366 aa8.85□□□□□ -0.99
VPS11-209ENST00000622309 AKR1B15C9JRZ8 316 aaPredicted RBP8.85□□□□□ -0.99
VPS11-209ENST00000622309 HSF2BPO75031 334 aa8.85□□□□□ -0.99
VPS11-209ENST00000622309 FAM163BP0C2L3 166 aa8.85□□□□□ -0.99
VPS11-209ENST00000622309 GNAT1P11488 350 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms