RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 MIGA2Q7L4E1 593 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 IQCA1Q86XH1 822 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 HSCBQ8IWL3 235 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 SULF1Q8IWU6 871 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 CDAN1Q8IWY9 1227 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 HOOK2Q96ED9 719 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 ZSCAN10Q96SZ4 725 aaPredicted RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 UBAC1Q9BSL1 405 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 GPHNQ9NQX3 736 aaPredicted RBP9.44□□□□□ -0.9
CPNE3-209ENST00000620393 IL17RBQ9NRM6 502 aa9.44□□□□□ -0.9
CPNE3-209ENST00000620393 ERICH2A1L162 156 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 FAM196BA6NMK8 535 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 SH2B2O14492 632 aaPredicted RBP9.43□□□□□ -0.9
CPNE3-209ENST00000620393 AKR1B1P15121 316 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 NOVP48745 357 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 SEC23AQ15436 765 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 TMEM67Q5HYA8 995 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 PRAMEF18Q5VWM3 479 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 CDC37L1Q7L3B6 337 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 KRT26Q7Z3Y9 468 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 USP48Q86UV5 1035 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 SGMS1Q86VZ5 419 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 DGKHQ86XP1 1220 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 BRF1Q92994 677 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 ZNF274Q96GC6 653 aaPredicted RBP9.43□□□□□ -0.9
CPNE3-209ENST00000620393 ZSCAN31Q96LW9 406 aaPredicted RBP9.43□□□□□ -0.9
CPNE3-209ENST00000620393 IPO9Q96P70 1041 aaKnown RBP9.43□□□□□ -0.9
CPNE3-209ENST00000620393 ZKSCAN3Q9BRR0 538 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 LARP6Q9BRS8 491 aaKnown RBP9.43□□□□□ -0.9
CPNE3-209ENST00000620393 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.43□□□□□ -0.9
CPNE3-209ENST00000620393 TPCN1Q9ULQ1 816 aa9.43□□□□□ -0.9
CPNE3-209ENST00000620393 ANGEL1Q9UNK9 670 aaKnown RBP9.43□□□□□ -0.9
CPNE3-209ENST00000620393 IGKV6D-41A0A0C4DH26 115 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 PHF20L1A8MW92 1017 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 K7ELQ4 463 aaPredicted RBP9.42□□□□□ -0.9
CPNE3-209ENST00000620393 APOBRQ0VD83 1088 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 RRP1BQ14684 758 aaKnown RBP9.42□□□□□ -0.9
CPNE3-209ENST00000620393 WTAPQ15007 396 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 ABCB5Q2M3G0 1257 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 PPP4R3BQ5MIZ7 849 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 DCAF15Q66K64 600 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 RCSD1Q6JBY9 416 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 ENAHQ8N8S7 591 aaPredicted RBP9.42□□□□□ -0.9
CPNE3-209ENST00000620393 TMX3Q96JJ7 454 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 LY9Q9HBG7 655 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 SENP2Q9HC62 589 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 CABP5Q9NP86 173 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 NMRK2Q9NPI5 230 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 SH2B1Q9NRF2 756 aaPredicted RBP9.42□□□□□ -0.9
CPNE3-209ENST00000620393 ZNF112Q9UJU3 913 aa9.42□□□□□ -0.9
CPNE3-209ENST00000620393 TNKSO95271 1327 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 ADM5C9JUS6 153 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 NMT2O60551 498 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 PDIA3P30101 505 aaKnown RBP9.41□□□□□ -0.9
CPNE3-209ENST00000620393 CAP2P40123 477 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 ME3Q16798 604 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 IFIT1BQ5T764 474 aaKnown RBP9.41□□□□□ -0.9
CPNE3-209ENST00000620393 LCE2DQ5TA82 110 aaPredicted RBP9.41□□□□□ -0.9
CPNE3-209ENST00000620393 NFXL1Q6ZNB6 911 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 TMEM179Q6ZVK1 233 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 NOL8Q76FK4 1167 aaKnown RBP9.41□□□□□ -0.9
CPNE3-209ENST00000620393 LDHDQ86WU2 507 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 ZNF341Q9BYN7 854 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 KANSL2Q9H9L4 492 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 GINM1Q9NU53 330 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 MTMR4Q9NYA4 1195 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 DAXXQ9UER7 740 aaPredicted RBP9.41□□□□□ -0.9
CPNE3-209ENST00000620393 BRPF3Q9ULD4 1205 aa9.41□□□□□ -0.9
CPNE3-209ENST00000620393 ADAMTSL1Q8N6G6 1762 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 KLF18A0A0U1RQI7 1052 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 CCDC69A6NI79 296 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 MPHOSPH10O00566 681 aaKnown RBP9.4□□□□□ -0.9
CPNE3-209ENST00000620393 CTNND1O60716 968 aaKnown RBP9.4□□□□□ -0.9
CPNE3-209ENST00000620393 PFKFB2O60825 505 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 USP2O75604 605 aaPredicted RBP9.4□□□□□ -0.9
CPNE3-209ENST00000620393 GH2P01242 217 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 TOP1P11387 765 aaKnown RBP9.4□□□□□ -0.9
CPNE3-209ENST00000620393 GUCY1A2P33402 732 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 SLC4A3P48751 1232 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 JAG1P78504 1218 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 CUL4AQ13619 759 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 DLK2Q6UY11 383 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 SYNE3Q6ZMZ3 975 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 SIAH1Q8IUQ4 282 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 ZNF526Q8TF50 670 aaPredicted RBP9.4□□□□□ -0.9
CPNE3-209ENST00000620393 MKL1Q969V6 931 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 CHMP4CQ96CF2 233 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 CEP95Q96GE4 821 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 TMEM47Q9BQJ4 181 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 GLIS2Q9BZE0 524 aaPredicted RBP9.4□□□□□ -0.9
CPNE3-209ENST00000620393 SLKQ9H2G2 1235 aaPredicted RBP9.4□□□□□ -0.9
CPNE3-209ENST00000620393 NYAP2Q9P242 653 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 SLC12A7Q9Y666 1083 aa9.4□□□□□ -0.9
CPNE3-209ENST00000620393 PLIN4Q96Q06 1357 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 ZBTB43O43298 467 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 PPP1R12BO60237 982 aaPredicted RBP9.39□□□□□ -0.91
CPNE3-209ENST00000620393 GDF11O95390 407 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 LARGE1O95461 756 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 TTLL1O95922 423 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms