RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 TEX9Q8N6V9 391 aa16.53■□□□□ 0.24
COL5A1-208ENST00000618395 KLF18A0A0U1RQI7 1052 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 DNAJC6O75061 913 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 PDXDC1Q6P996 788 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 PARP9Q8IXQ6 854 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 SMARCA4P51532 1647 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 KRIT1O00522 736 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 EPB41P11171 864 aaKnown RBP16.52■□□□□ 0.24
COL5A1-208ENST00000618395 ATP6V1E1P36543 226 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 DAB2P98082 770 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 ZNF653Q96CK0 615 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 NUTM2BA6NNL0 878 aaPredicted RBP16.52■□□□□ 0.24
COL5A1-208ENST00000618395 NUTM2EB1AL46 878 aaPredicted RBP16.52■□□□□ 0.24
COL5A1-208ENST00000618395 RTN1Q16799 776 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 SESTD1Q86VW0 696 aa16.52■□□□□ 0.24
COL5A1-208ENST00000618395 TRPC5Q9UL62 973 aaPredicted RBP16.52■□□□□ 0.24
COL5A1-208ENST00000618395 ALS2CLQ60I27 953 aa16.52■□□□□ 0.23
COL5A1-208ENST00000618395 PPME1Q9Y570 386 aa16.52■□□□□ 0.23
COL5A1-208ENST00000618395 PHLPP2Q6ZVD8 1323 aa16.52■□□□□ 0.23
COL5A1-208ENST00000618395 PALM2Q8IXS6 379 aa16.52■□□□□ 0.23
COL5A1-208ENST00000618395 LZTS1Q9Y250 596 aa16.52■□□□□ 0.23
COL5A1-208ENST00000618395 CCDC141Q6ZP82 1450 aa16.52■□□□□ 0.23
COL5A1-208ENST00000618395 MAPK13O15264 365 aa16.52■□□□□ 0.23
COL5A1-208ENST00000618395 SYCE1LA8MT33 242 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 GNGT2O14610 69 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 EPHB4P54760 987 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 CACTINQ8WUQ7 758 aaKnown RBP16.51■□□□□ 0.23
COL5A1-208ENST00000618395 ARHGEF18Q6ZSZ5 1173 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 TNFAIP3P21580 790 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 MSH2P43246 934 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 MYSM1Q5VVJ2 828 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 TRAF7Q6Q0C0 670 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 ERBINQ96RT1 1412 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 ABTB2Q8N961 1025 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 MLKLQ8NB16 471 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 GRK7Q8WTQ7 553 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 TRIM8Q9BZR9 551 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 KAT14Q9H8E8 782 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 LIN9Q5TKA1 542 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 RAD54L2Q9Y4B4 1467 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 HNRNPCL2B2RXH8 293 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 HNRNPCL1O60812 293 aaKnown RBP16.51■□□□□ 0.23
COL5A1-208ENST00000618395 KRT5P13647 590 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 ELF1P32519 619 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 SLC12A2P55011 1212 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 PDE4BQ07343 736 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 WTAPQ15007 396 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 OSBPL9Q96SU4 736 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 SLF1Q9BQI6 1058 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 KLC4Q9NSK0 619 aa16.51■□□□□ 0.23
COL5A1-208ENST00000618395 RASGRF2O14827 1237 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 MYCNP04198 464 aaPredicted RBP16.5■□□□□ 0.23
COL5A1-208ENST00000618395 CDR2Q01850 454 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 PNMA6AP0CW24 399 aaPredicted RBP16.5■□□□□ 0.23
COL5A1-208ENST00000618395 NLRP12P59046 1061 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 CNNM4Q6P4Q7 775 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 TRIM42Q8IWZ5 723 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 HYOU1Q9Y4L1 999 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 ANGPTL3Q9Y5C1 460 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 MAN1A1P33908 653 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 CARSP49589 748 aaKnown RBP16.5■□□□□ 0.23
COL5A1-208ENST00000618395 CEP55Q53EZ4 464 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 SH3GL1Q99961 368 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 DCTN3O75935 186 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 CALML3P27482 149 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 IFNAR2P48551 515 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 NLRP6P59044 892 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 DTHD1Q6ZMT9 781 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 HSPA8P11142 646 aaKnown RBP16.5■□□□□ 0.23
COL5A1-208ENST00000618395 FAM210AQ96ND0 272 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 CAPN11Q9UMQ6 739 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 RBM42Q9BTD8 480 aaKnown RBP16.5■□□□□ 0.23
COL5A1-208ENST00000618395 AMFRQ9UKV5 643 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 GTPBP10A4D1E9 387 aaKnown RBP16.5■□□□□ 0.23
COL5A1-208ENST00000618395 TCP1P17987 556 aaKnown RBP16.5■□□□□ 0.23
COL5A1-208ENST00000618395 IGHMBP2P38935 993 aaKnown RBP16.5■□□□□ 0.23
COL5A1-208ENST00000618395 SULT6B1Q6IMI4 303 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 KRT23Q9C075 422 aa16.5■□□□□ 0.23
COL5A1-208ENST00000618395 GNAT2P19087 354 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 KRT2P35908 639 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 LAMB3Q13751 1172 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 SNX29Q8TEQ0 813 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.49■□□□□ 0.23
COL5A1-208ENST00000618395 CABP2Q9NPB3 220 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 PPP2R2CQ9Y2T4 447 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 NBPF14Q5TI25 921 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 HELLSQ9NRZ9 838 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 SEC31AO94979 1220 aaKnown RBP16.49■□□□□ 0.23
COL5A1-208ENST00000618395 NR1D1P20393 614 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 IL1RL1Q01638 556 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 ICA1LQ8NDH6 482 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 PHKBQ93100 1093 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 ADAM21Q9UKJ8 722 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 ENOX1Q8TC92 643 aaKnown RBP16.49■□□□□ 0.23
COL5A1-208ENST00000618395 PSDA5PKW4 1024 aaPredicted RBP16.49■□□□□ 0.23
COL5A1-208ENST00000618395 LONRF3Q496Y0 759 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 BEND3Q5T5X7 828 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 CARD10Q9BWT7 1032 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 BTBD11A6QL63 1104 aa16.49■□□□□ 0.23
COL5A1-208ENST00000618395 TATP17735 454 aaPredicted RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms