RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 POLR2AP24928 1970 aaKnown RBP16.66■□□□□ 0.26
USP39-220ENST00000613444 CPLX1O14810 134 aa16.65■□□□□ 0.26
USP39-220ENST00000613444 KIF4BQ2VIQ3 1234 aa16.65■□□□□ 0.26
USP39-220ENST00000613444 CRACR2BQ8N4Y2 399 aaPredicted RBP16.65■□□□□ 0.26
USP39-220ENST00000613444 NUP133Q8WUM0 1156 aa16.65■□□□□ 0.26
USP39-220ENST00000613444 TMEM47Q9BQJ4 181 aa16.65■□□□□ 0.26
USP39-220ENST00000613444 IFNAR1P17181 557 aa16.65■□□□□ 0.26
USP39-220ENST00000613444 PDCP20941 246 aa16.65■□□□□ 0.26
USP39-220ENST00000613444 PPP2R5BQ15173 497 aa16.65■□□□□ 0.26
USP39-220ENST00000613444 BAZ2BQ9UIF8 2168 aaKnown RBP16.65■□□□□ 0.26
USP39-220ENST00000613444 DDNO94850 711 aaPredicted RBP16.64■□□□□ 0.25
USP39-220ENST00000613444 ZSCAN22P10073 491 aaPredicted RBP16.64■□□□□ 0.25
USP39-220ENST00000613444 SHROOM1Q2M3G4 852 aaPredicted RBP16.64■□□□□ 0.25
USP39-220ENST00000613444 NBPF11Q86T75 865 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 PNMA1Q8ND90 353 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 TRPM4Q8TD43 1214 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 CCDC17Q96LX7 622 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 MTMR4Q9NYA4 1195 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 STX8Q9UNK0 236 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 H7C1D1 291 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 CALM1P0DP23 149 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 CALM2P0DP24 149 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 CALM3P0DP25 149 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 EPS15P42566 896 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 FUT2Q10981 343 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 RRP1BQ14684 758 aaKnown RBP16.64■□□□□ 0.25
USP39-220ENST00000613444 FOXD4L5Q5VV16 416 aaPredicted RBP16.64■□□□□ 0.25
USP39-220ENST00000613444 FOXD4L4Q8WXT5 416 aaPredicted RBP16.64■□□□□ 0.25
USP39-220ENST00000613444 PHKBQ93100 1093 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 KAT14Q9H8E8 782 aa16.64■□□□□ 0.25
USP39-220ENST00000613444 HERC5Q9UII4 1024 aaKnown RBP16.64■□□□□ 0.25
USP39-220ENST00000613444 SCAF8Q9UPN6 1271 aaKnown RBP16.64■□□□□ 0.25
USP39-220ENST00000613444 SOCS7O14512 581 aa16.63■□□□□ 0.25
USP39-220ENST00000613444 CDKL5O76039 1030 aa16.63■□□□□ 0.25
USP39-220ENST00000613444 PDIA4P13667 645 aaKnown RBP16.63■□□□□ 0.25
USP39-220ENST00000613444 CDC37L1Q7L3B6 337 aa16.63■□□□□ 0.25
USP39-220ENST00000613444 FAM184AQ8NB25 1140 aa16.63■□□□□ 0.25
USP39-220ENST00000613444 TEPSINQ96N21 525 aa16.63■□□□□ 0.25
USP39-220ENST00000613444 MAP3K14Q99558 947 aa16.63■□□□□ 0.25
USP39-220ENST00000613444 ORC3Q9UBD5 711 aaPredicted RBP16.63■□□□□ 0.25
USP39-220ENST00000613444 HACL1Q9UJ83 578 aa16.63■□□□□ 0.25
USP39-220ENST00000613444 CCDC196A0A1B0GTZ2 297 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 HIRAP54198 1017 aaPredicted RBP16.62■□□□□ 0.25
USP39-220ENST00000613444 MAP3K10Q02779 954 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 RASA3Q14644 834 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 GPR162Q16538 588 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 CERKLQ49MI3 558 aaPredicted RBP16.62■□□□□ 0.25
USP39-220ENST00000613444 CLEC10AQ8IUN9 316 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 STK36Q9NRP7 1315 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 UBE2Q2LH0YL09 131 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 TBC1D12O60347 775 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 BAG4O95429 457 aaKnown RBP16.62■□□□□ 0.25
USP39-220ENST00000613444 JAG1P78504 1218 aa16.62■□□□□ 0.25
USP39-220ENST00000613444 CPLX2Q6PUV4 134 aaKnown RBP16.62■□□□□ 0.25
USP39-220ENST00000613444 CMTR1Q8N1G2 835 aaKnown RBP16.62■□□□□ 0.25
USP39-220ENST00000613444 PLEKHA8P1O95397 391 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 FMNL1O95466 1100 aaPredicted RBP16.61■□□□□ 0.25
USP39-220ENST00000613444 F13A1P00488 732 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 TOP1P11387 765 aaKnown RBP16.61■□□□□ 0.25
USP39-220ENST00000613444 GUCY1A2P33402 732 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 CHAMP1Q96JM3 812 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 RBM28Q9NW13 759 aaKnown RBP16.61■□□□□ 0.25
USP39-220ENST00000613444 MYH15Q9Y2K3 1946 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 VPS37CA5D8V6 355 aaPredicted RBP16.61■□□□□ 0.25
USP39-220ENST00000613444 MCM4P33991 863 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 TNNI2P48788 182 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 TNFAIP1Q13829 316 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 GRM4Q14833 912 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 TMTC3Q6ZXV5 915 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 TRIM34Q9BYJ4 488 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.61■□□□□ 0.25
USP39-220ENST00000613444 KIF3AQ9Y496 699 aa16.61■□□□□ 0.25
USP39-220ENST00000613444 ATAD5Q96QE3 1844 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 SIAH1Q8IUQ4 282 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 AIFM3Q96NN9 605 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 MAD2L2Q9UI95 211 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 MPHOSPH10O00566 681 aaKnown RBP16.6■□□□□ 0.25
USP39-220ENST00000613444 GRIN3BO60391 1043 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 GDF11O95390 407 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 TTLL1O95922 423 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 RASGRP2Q7LDG7 609 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 SRBD1Q8N5C6 995 aaKnown RBP16.6■□□□□ 0.25
USP39-220ENST00000613444 CTCFLQ8NI51 663 aaPredicted RBP16.6■□□□□ 0.25
USP39-220ENST00000613444 SLC26A6Q9BXS9 759 aa16.6■□□□□ 0.25
USP39-220ENST00000613444 SSRP1Q08945 709 aaKnown RBP16.59■□□□□ 0.25
USP39-220ENST00000613444 ABCB5Q2M3G0 1257 aa16.59■□□□□ 0.25
USP39-220ENST00000613444 ANGEL2Q5VTE6 544 aaKnown RBP16.59■□□□□ 0.25
USP39-220ENST00000613444 TMEM179Q6ZVK1 233 aa16.59■□□□□ 0.25
USP39-220ENST00000613444 STAG2Q8N3U4 1231 aa16.59■□□□□ 0.25
USP39-220ENST00000613444 CCDC82Q8N4S0 544 aa16.59■□□□□ 0.25
USP39-220ENST00000613444 GBP4Q96PP9 640 aa16.59■□□□□ 0.25
USP39-220ENST00000613444 DEFB129Q9H1M3 183 aa16.59■□□□□ 0.25
USP39-220ENST00000613444 GJB4Q9NTQ9 266 aa16.59■□□□□ 0.25
USP39-220ENST00000613444 CNTNAP5Q8WYK1 1306 aa16.58■□□□□ 0.25
USP39-220ENST00000613444 PALM3A6NDB9 673 aaPredicted RBP16.58■□□□□ 0.25
USP39-220ENST00000613444 SEPT2Q15019 361 aa16.58■□□□□ 0.25
USP39-220ENST00000613444 SLC35G1Q2M3R5 365 aa16.58■□□□□ 0.25
USP39-220ENST00000613444 RGS22Q8NE09 1264 aa16.58■□□□□ 0.25
USP39-220ENST00000613444 FBXO18Q8NFZ0 1043 aa16.58■□□□□ 0.25
USP39-220ENST00000613444 L3MBTL3Q96JM7 780 aaPredicted RBP16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms