RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ATP2A1O14983 1001 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 PDE6BP35913 854 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 IL1RAPL1Q9NZN1 696 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 STX10O60499 249 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 XAB2Q9HCS7 855 aaKnown RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 FHOD1Q9Y613 1164 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 TADA3O75528 432 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 RTN3O95197 1032 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 TUBA4AP68366 448 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 ST5P78524 1137 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 TSHZ1Q6ZSZ6 1077 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 MRPL12P52815 198 aaKnown RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 SGSM3Q96HU1 749 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 DDX23Q9BUQ8 820 aaKnown RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 KDM6BO15054 1643 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 PRPF38AQ8NAV1 312 aaKnown RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.47□□□□□ -1.537e-6■□□□□ 11.1
VPS13D-213ENST00000613099 KRT2P35908 639 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 NANOGNBQ7Z5D8 188 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 ZNF287Q9HBT7 754 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 HOMER2Q9NSB8 354 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 SEPT3Q9UH03 358 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 CPP00450 1065 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 LARP1Q6PKG0 1096 aaKnown RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 NSMCE1Q8WV22 266 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 KCNA4P22459 653 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 KCNJ6P48051 423 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 CDCA7Q9BWT1 371 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 GADD45BO75293 160 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 S100A1P23297 94 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 EXOSC9Q06265 439 aaKnown RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 PRPF40BQ6NWY9 871 aaKnown RBP5.47□□□□□ -1.53
VPS13D-213ENST00000613099 PIK3R4Q99570 1358 aa5.47□□□□□ -1.53
VPS13D-213ENST00000613099 C8orf74Q6P047 294 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 ENOX1Q8TC92 643 aaKnown RBP5.46□□□□□ -1.53
VPS13D-213ENST00000613099 PRM3Q9NNZ6 103 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 TLDC2A0PJX2 215 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 CYTH3O43739 400 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 TSPAN9O75954 239 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 GLE1Q53GS7 698 aaKnown RBP5.46□□□□□ -1.53
VPS13D-213ENST00000613099 CEP70Q8NHQ1 597 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 LEO1Q8WVC0 666 aaPredicted RBP5.46□□□□□ -1.53
VPS13D-213ENST00000613099 NUDCD1Q96RS6 583 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 C21orf2O43822 256 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 MYBL2P10244 700 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 ACADSP16219 412 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 SKOR1P84550 965 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 SARM1Q6SZW1 724 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 RNF14Q9UBS8 474 aa5.46□□□□□ -1.53
VPS13D-213ENST00000613099 CLASP1Q7Z460 1538 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 DIAPH2O60879 1101 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 POTEJP0CG39 1038 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 BICDL1Q6ZP65 573 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 TMEM87AQ8NBN3 555 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 SIRT1Q96EB6 747 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 TANGO6Q9C0B7 1094 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.46□□□□□ -1.549e-6■■□□□ 11.5
VPS13D-213ENST00000613099 LRRC8CQ8TDW0 803 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 PLEKHA4Q9H4M7 779 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 C1orf115Q9H7X2 142 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 GID8Q9NWU2 228 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 STK26Q9P289 416 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 ABCC10Q5T3U5 1492 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 TRIM27P14373 513 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 ZC3H13Q5T200 1668 aaKnown RBP5.46□□□□□ -1.54
VPS13D-213ENST00000613099 IDEP14735 1019 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 SDSP20132 328 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 CYB5RLQ6IPT4 315 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 CROCCP3Q8IVE0 287 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 MSL3P1P0C860 447 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 STK3Q13188 491 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 ATP11CQ8NB49 1132 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 PDHA1P08559 390 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 SMCR8Q8TEV9 937 aaPredicted RBP5.46□□□□□ -1.54
VPS13D-213ENST00000613099 MAK16Q9BXY0 300 aaKnown RBP5.46□□□□□ -1.54
VPS13D-213ENST00000613099 PARP2Q9UGN5 583 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 SYCP2Q9BX26 1530 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 TMTC2Q8N394 836 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 IL17RAQ96F46 866 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 CCT8L2Q96SF2 557 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 WDR37Q9Y2I8 494 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 DUOX2Q9NRD8 1548 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 B4DLN1 442 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 NUP58Q9BVL2 599 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 IL16Q14005 1332 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 BAG2O95816 211 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 H2AFXP16104 143 aaPredicted RBP5.46□□□□□ -1.54
VPS13D-213ENST00000613099 ATP5JP18859 108 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 PDE6CP51160 858 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 CCDC15Q0P6D6 951 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 GPR101Q96P66 508 aaPredicted RBP5.46□□□□□ -1.54
VPS13D-213ENST00000613099 SPZ1Q9BXG8 430 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 OSBPL5Q9H0X9 879 aaPredicted RBP5.46□□□□□ -1.54
VPS13D-213ENST00000613099 STRNO43815 780 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 SH3BP5O60239 455 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 GCLCP48506 637 aaPredicted RBP5.46□□□□□ -1.54
VPS13D-213ENST00000613099 KCNB1Q14721 858 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 ZC3H18Q86VM9 953 aaKnown RBP5.46□□□□□ -1.54
VPS13D-213ENST00000613099 MLKLQ8NB16 471 aa5.46□□□□□ -1.54
VPS13D-213ENST00000613099 CLMNQ96JQ2 1002 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms