RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 KSR1Q8IVT5 923 aa7.06□□□□□ -1.28
LINC00540-201ENST00000611481 SMYD4Q8IYR2 804 aaPredicted RBP7.06□□□□□ -1.28
LINC00540-201ENST00000611481 FANCD2OSQ96PS1 177 aa7.06□□□□□ -1.28
LINC00540-201ENST00000611481 CCDC86Q9H6F5 360 aaKnown RBP7.06□□□□□ -1.28
LINC00540-201ENST00000611481 MKNK2Q9HBH9 465 aa7.06□□□□□ -1.28
LINC00540-201ENST00000611481 PTCH1Q13635 1447 aa7.06□□□□□ -1.28
LINC00540-201ENST00000611481 KIAA1107Q9UPP5 1409 aa7.06□□□□□ -1.28
LINC00540-201ENST00000611481 NCOA3Q9Y6Q9 1424 aa7.06□□□□□ -1.28
LINC00540-201ENST00000611481 ARHGAP35Q9NRY4 1499 aa7.05□□□□□ -1.28
LINC00540-201ENST00000611481 CPNE3O75131 537 aaKnown RBP7.05□□□□□ -1.28
LINC00540-201ENST00000611481 PRELPP51888 382 aa7.05□□□□□ -1.28
LINC00540-201ENST00000611481 IFI16Q16666 785 aaKnown RBP7.05□□□□□ -1.28
LINC00540-201ENST00000611481 WDR89Q96FK6 387 aaPredicted RBP7.05□□□□□ -1.28
LINC00540-201ENST00000611481 EGFL7Q9UHF1 273 aa7.05□□□□□ -1.28
LINC00540-201ENST00000611481 ADAMTS6Q9UKP5 1117 aa7.05□□□□□ -1.28
LINC00540-201ENST00000611481 RALGAPBQ86X10 1494 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 PLEKHH2Q8IVE3 1493 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 AOC3Q16853 763 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 FBLN7Q53RD9 439 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 PRPF40BQ6NWY9 871 aaKnown RBP7.04□□□□□ -1.28
LINC00540-201ENST00000611481 ARHGAP27Q6ZUM4 889 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 LRRN4CLQ8ND94 238 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 HRASLS5Q96KN8 279 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 SPON1Q9HCB6 807 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 ABCB6Q9NP58 842 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 NPHS2Q9NP85 383 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 DISC1Q9NRI5 854 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 SPHKAPQ2M3C7 1700 aa7.04□□□□□ -1.28
LINC00540-201ENST00000611481 GLI3P10071 1580 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 PIK3C2BO00750 1634 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 TMEM265A0A087WTH1 108 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 ICMTO60725 284 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 RNGTTO60942 597 aaKnown RBP7.03□□□□□ -1.28
LINC00540-201ENST00000611481 CD96P40200 585 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 PDE3BQ13370 1112 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 EZH2Q15910 746 aaKnown RBP7.03□□□□□ -1.28
LINC00540-201ENST00000611481 KIF4BQ2VIQ3 1234 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 KRT27Q7Z3Y8 459 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 SLC38A3Q99624 504 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 ZC3H12CQ9C0D7 883 aaKnown RBP7.03□□□□□ -1.28
LINC00540-201ENST00000611481 KRT82Q9NSB4 513 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 CFDP1Q9UEE9 299 aaPredicted RBP7.03□□□□□ -1.28
LINC00540-201ENST00000611481 UTRNP46939 3433 aa7.03□□□□□ -1.28
LINC00540-201ENST00000611481 CHD2O14647 1828 aaKnown RBP7.03□□□□□ -1.28
LINC00540-201ENST00000611481 FMN1Q68DA7 1419 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 CHD4Q14839 1912 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 TMEM238LA0A1B0GVL6 79 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 KCNQ2O43526 872 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 NDUFB5O43674 189 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 ZNF862O60290 1169 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 CEACAM5P06731 702 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 OXCT1P55809 520 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 ORC1Q13415 861 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 TTLL4Q14679 1199 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 LCE4AQ5TA78 99 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 ANGEL2Q5VTE6 544 aaKnown RBP7.02□□□□□ -1.29
LINC00540-201ENST00000611481 SPOCD1Q6ZMY3 1216 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 DUSP23Q9BVJ7 150 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 PCOLCE2Q9UKZ9 415 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 TRAK1Q9UPV9 953 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 U3KQE9 123 aa7.02□□□□□ -1.29
LINC00540-201ENST00000611481 LRRIQ1Q96JM4 1722 aa7.01□□□□□ -1.29
LINC00540-201ENST00000611481 GADD45BO75293 160 aaPredicted RBP7.01□□□□□ -1.29
LINC00540-201ENST00000611481 LEFTY1O75610 366 aa7.01□□□□□ -1.29
LINC00540-201ENST00000611481 GSTP1P09211 210 aaKnown RBP7.01□□□□□ -1.29
LINC00540-201ENST00000611481 ZNF157P51786 506 aaPredicted RBP7.01□□□□□ -1.29
LINC00540-201ENST00000611481 SLC23A3Q6PIS1 610 aa7.01□□□□□ -1.29
LINC00540-201ENST00000611481 PCDHGC5Q9Y5F6 944 aa7.01□□□□□ -1.29
LINC00540-201ENST00000611481 EFCAB6Q5THR3 1501 aa7.01□□□□□ -1.29
LINC00540-201ENST00000611481 MST1RQ04912 1400 aa7.01□□□□□ -1.29
LINC00540-201ENST00000611481 HCLS1P14317 486 aaPredicted RBP7□□□□□ -1.29
LINC00540-201ENST00000611481 HSPA6P17066 643 aa7□□□□□ -1.29
LINC00540-201ENST00000611481 FAAP100Q0VG06 881 aa7□□□□□ -1.29
LINC00540-201ENST00000611481 UNC5CLQ8IV45 518 aa7□□□□□ -1.29
LINC00540-201ENST00000611481 GLYCTKQ8IVS8 523 aa7□□□□□ -1.29
LINC00540-201ENST00000611481 CCDC74AQ96AQ1 378 aa7□□□□□ -1.29
LINC00540-201ENST00000611481 FAM84AQ96KN4 292 aa7□□□□□ -1.29
LINC00540-201ENST00000611481 DNAJC25Q9H1X3 360 aa7□□□□□ -1.29
LINC00540-201ENST00000611481 PLAGL2Q9UPG8 496 aa7□□□□□ -1.29
LINC00540-201ENST00000611481 ZNF644Q9H582 1327 aaPredicted RBP7□□□□□ -1.29
LINC00540-201ENST00000611481 H3BRB1 525 aa6.99□□□□□ -1.29
LINC00540-201ENST00000611481 PPP2R3AQ06190 1150 aa6.99□□□□□ -1.29
LINC00540-201ENST00000611481 FLAD1Q8NFF5 587 aa6.99□□□□□ -1.29
LINC00540-201ENST00000611481 CITED4Q96RK1 184 aa6.99□□□□□ -1.29
LINC00540-201ENST00000611481 FAM129BQ96TA1 746 aa6.99□□□□□ -1.29
LINC00540-201ENST00000611481 TUT1Q9H6E5 874 aaKnown RBP6.99□□□□□ -1.29
LINC00540-201ENST00000611481 FAM53CQ9NYF3 392 aa6.99□□□□□ -1.29
LINC00540-201ENST00000611481 SNX11Q9Y5W9 270 aa6.99□□□□□ -1.29
LINC00540-201ENST00000611481 RGPD1P0DJD0 1748 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 EIF1AYO14602 144 aaKnown RBP6.98□□□□□ -1.29
LINC00540-201ENST00000611481 MESP2Q0VG99 397 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 ECM1Q16610 540 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 KRTAP19-4Q3LI73 84 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 B4GALNT3Q6L9W6 998 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 CCDC82Q8N4S0 544 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 TOP6BLQ8N6T0 577 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 BHLHE22Q8NFJ8 381 aaPredicted RBP6.98□□□□□ -1.29
LINC00540-201ENST00000611481 KCNB2Q92953 911 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 SSU72Q9NP77 194 aaKnown RBP6.98□□□□□ -1.29
LINC00540-201ENST00000611481 TMEM39AQ9NV64 488 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms