RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 USP17L11C9JVI0 530 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 USP17L18D6R9N7 530 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 USP17L22D6RA61 530 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 USP17L17D6RBQ6 530 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 USP17L19D6RCP7 530 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 USP17L20D6RJB6 530 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 HMGCRP04035 888 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 XRCC5P13010 732 aaKnown RBP9.22□□□□□ -0.93
CUX1-219ENST00000606749 CYP2B6P20813 491 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 MAPK4P31152 587 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 ADD2P35612 726 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 USP14P54578 494 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 ERVK-9P63128 1117 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 ERVK-24P63145 666 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 EVX2Q03828 476 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 USP17L24Q0WX57 530 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 TRIM32Q13049 653 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 ZYXQ15942 572 aaKnown RBP9.22□□□□□ -0.93
CUX1-219ENST00000606749 CATSPERGQ6ZRH7 1159 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 LCORLQ8N3X6 602 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 GTF3C2Q8WUA4 911 aaPredicted RBP9.22□□□□□ -0.93
CUX1-219ENST00000606749 SDR42E1Q8WUS8 393 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 FEZ1Q99689 392 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 HAUS7Q99871 368 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 PORCNQ9H237 461 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 HMX1Q9NP08 348 aaPredicted RBP9.22□□□□□ -0.93
CUX1-219ENST00000606749 PAG1Q9NWQ8 432 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 RABGAP1Q9Y3P9 1069 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 RPTORQ8N122 1335 aa9.22□□□□□ -0.93
CUX1-219ENST00000606749 PRKAB2O43741 272 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 CNMDO75829 334 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 CYP2D6P10635 497 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 VCAM1P19320 739 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 SEPT2Q15019 361 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 MORN1Q5T089 497 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 GPR142Q7Z601 462 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 CCAR1Q8IX12 1150 aaKnown RBP9.21□□□□□ -0.94
CUX1-219ENST00000606749 SOCS4Q8WXH5 440 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 TRIB2Q92519 343 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 USP6NLQ92738 828 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 PAGR1Q9BTK6 254 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 LRRCC1Q9C099 1032 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.21□□□□□ -0.945e-7■■□□□ 11.4
CUX1-219ENST00000606749 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.21□□□□□ -0.944e-8■■■■□ 25.2
CUX1-219ENST00000606749 ARMT1Q9H993 441 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 ATP8A2Q9NTI2 1148 aa9.21□□□□□ -0.94
CUX1-219ENST00000606749 A0A1W2PRG0 241 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 MPHOSPH10O00566 681 aaKnown RBP9.2□□□□□ -0.94
CUX1-219ENST00000606749 SMARCA5O60264 1052 aaPredicted RBP9.2□□□□□ -0.94
CUX1-219ENST00000606749 MBD4O95243 580 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 CHGBP05060 677 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 FXR1P51114 621 aaKnown RBP eCLIP9.2□□□□□ -0.94
CUX1-219ENST00000606749 UBE3CQ15386 1083 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 MAP3K21Q5TCX8 1036 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 LBX2Q6XYB7 198 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 PLEKHH3Q7Z736 793 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 SIAH1Q8IUQ4 282 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 TRMT44Q8IYL2 757 aaKnown RBP9.2□□□□□ -0.94
CUX1-219ENST00000606749 SLC44A5Q8NCS7 719 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 DYNLL2Q96FJ2 89 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 PAWRQ96IZ0 340 aaKnown RBP9.2□□□□□ -0.94
CUX1-219ENST00000606749 RPAP3Q9H6T3 665 aaPredicted RBP9.2□□□□□ -0.94
CUX1-219ENST00000606749 SWAP70Q9UH65 585 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 NR2E3Q9Y5X4 410 aa9.2□□□□□ -0.94
CUX1-219ENST00000606749 USP17L12C9JPN9 530 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 USP17L21D6R901 530 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 SMIM22K7EJ46 135 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 EVI5O60447 810 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 PRKAR2AP13861 404 aaKnown RBP9.19□□□□□ -0.94
CUX1-219ENST00000606749 RGS2P41220 211 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 MNX1P50219 401 aaPredicted RBP9.19□□□□□ -0.94
CUX1-219ENST00000606749 CCNA1P78396 465 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 CACNB2Q08289 660 aaPredicted RBP9.19□□□□□ -0.94
CUX1-219ENST00000606749 CCL14Q16627 93 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 KIAA1755Q5JYT7 1200 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 C12orf60Q5U649 245 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 CHRDL2Q6WN34 429 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 TMEM179Q6ZVK1 233 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 NECAB2Q7Z6G3 386 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 ANKLE1Q8NAG6 615 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 DIS3LQ8TF46 1054 aaKnown RBP9.19□□□□□ -0.94
CUX1-219ENST00000606749 DCTPP1Q9H773 170 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 HOXC10Q9NYD6 342 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 BTBD7Q9P203 1132 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 RBM27Q9P2N5 1060 aaKnown RBP9.19□□□□□ -0.94
CUX1-219ENST00000606749 OGDHLQ9ULD0 1010 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 PLXNB2O15031 1838 aa9.19□□□□□ -0.94
CUX1-219ENST00000606749 CYP2D7A0A087X1C5 515 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 SPDYE16A6NNV3 312 aaPredicted RBP9.18□□□□□ -0.94
CUX1-219ENST00000606749 ZKSCAN1P17029 563 aaPredicted RBP9.18□□□□□ -0.94
CUX1-219ENST00000606749 PTPREP23469 700 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 CDK8P49336 464 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 MAP2K5Q13163 448 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 COG2Q14746 738 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 ZSCAN25Q6NSZ9 544 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 CTR9Q6PD62 1173 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 CCDC17Q96LX7 622 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 PUS7LQ9H0K6 701 aaKnown RBP9.18□□□□□ -0.94
CUX1-219ENST00000606749 PRO3102Q9H379 93 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 CWC22Q9HCG8 908 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms