RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 VPS53Q5VIR6 699 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 STK11IPQ8N1F8 1099 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 KIAA1683Q9H0B3 1180 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 MKNK2Q9HBH9 465 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 ZNF287Q9HBT7 754 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 PNMA3Q9UL41 463 aa20.1■□□□□ 0.81
TRIM28-215ENST00000601150 SLC3A2P08195 630 aaKnown RBP20.09■□□□□ 0.81
TRIM28-215ENST00000601150 CYP2C8P10632 490 aa20.09■□□□□ 0.81
TRIM28-215ENST00000601150 ALX1Q15699 326 aa20.09■□□□□ 0.81
TRIM28-215ENST00000601150 CWC27Q6UX04 472 aaKnown RBP20.09■□□□□ 0.81
TRIM28-215ENST00000601150 C17orf99Q6UX52 265 aa20.09■□□□□ 0.81
TRIM28-215ENST00000601150 ZNF589Q86UQ0 364 aaPredicted RBP20.09■□□□□ 0.81
TRIM28-215ENST00000601150 CD99L2Q8TCZ2 262 aa20.09■□□□□ 0.81
TRIM28-215ENST00000601150 ACER1Q8TDN7 264 aa20.09■□□□□ 0.81
TRIM28-215ENST00000601150 CCDC136Q96JN2 1154 aa20.09■□□□□ 0.81
TRIM28-215ENST00000601150 MCOLN1Q9GZU1 580 aa20.09■□□□□ 0.81
TRIM28-215ENST00000601150 CPA4Q9UI42 421 aa20.09■□□□□ 0.81
TRIM28-215ENST00000601150 OSBPP22059 807 aa20.08■□□□□ 0.81
TRIM28-215ENST00000601150 USP14P54578 494 aa20.08■□□□□ 0.81
TRIM28-215ENST00000601150 PPARAQ07869 468 aa20.08■□□□□ 0.81
TRIM28-215ENST00000601150 EMILIN3Q9NT22 766 aa20.08■□□□□ 0.81
TRIM28-215ENST00000601150 MGAMO43451 1857 aa20.07■□□□□ 0.8
TRIM28-215ENST00000601150 ZSWIM8A7E2V4 1837 aa20.07■□□□□ 0.8
TRIM28-215ENST00000601150 HSPD1P10809 573 aaKnown RBP20.07■□□□□ 0.8
TRIM28-215ENST00000601150 RASA1P20936 1047 aa20.07■□□□□ 0.8
TRIM28-215ENST00000601150 ZYXQ15942 572 aaKnown RBP20.07■□□□□ 0.8
TRIM28-215ENST00000601150 PKN2Q16513 984 aaKnown RBP20.07■□□□□ 0.8
TRIM28-215ENST00000601150 SMCR8Q8TEV9 937 aaPredicted RBP20.07■□□□□ 0.8
TRIM28-215ENST00000601150 C12orf42Q96LP6 360 aa20.07■□□□□ 0.8
TRIM28-215ENST00000601150 HOXA7P31268 230 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-215ENST00000601150 ICA1Q05084 483 aa20.06■□□□□ 0.8
TRIM28-215ENST00000601150 PDE4BQ07343 736 aa20.06■□□□□ 0.8
TRIM28-215ENST00000601150 KIF22Q14807 665 aa20.06■□□□□ 0.8
TRIM28-215ENST00000601150 ARHGEF6Q15052 776 aa20.06■□□□□ 0.8
TRIM28-215ENST00000601150 ASCC2Q9H1I8 757 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-215ENST00000601150 ARHGEF10LQ9HCE6 1279 aa20.06■□□□□ 0.8
TRIM28-215ENST00000601150 LAMA4Q16363 1823 aa20.06■□□□□ 0.8
TRIM28-215ENST00000601150 ZMYM6O95789 1325 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 A0A1W2PRG0 241 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 FGAP02671 866 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 BCRP11274 1271 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 IRX3P78415 501 aaPredicted RBP20.05■□□□□ 0.8
TRIM28-215ENST00000601150 LACTBP83111 547 aaPredicted RBP20.05■□□□□ 0.8
TRIM28-215ENST00000601150 ZNF444Q8N0Y2 327 aaPredicted RBP20.05■□□□□ 0.8
TRIM28-215ENST00000601150 SH2D4AQ9H788 454 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 KANSL2Q9H9L4 492 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 ANAPC4Q9UJX5 808 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 TRIM17Q9Y577 477 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 MYH4Q9Y623 1939 aa20.05■□□□□ 0.8
TRIM28-215ENST00000601150 PRDM1O75626 825 aa20.04■□□□□ 0.8
TRIM28-215ENST00000601150 OTOP1Q7RTM1 612 aa20.04■□□□□ 0.8
TRIM28-215ENST00000601150 CLEC10AQ8IUN9 316 aa20.04■□□□□ 0.8
TRIM28-215ENST00000601150 SIAH1Q8IUQ4 282 aa20.04■□□□□ 0.8
TRIM28-215ENST00000601150 ABHD8Q96I13 439 aa20.04■□□□□ 0.8
TRIM28-215ENST00000601150 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.04■□□□□ 0.8
TRIM28-215ENST00000601150 EFCC1Q9HA90 598 aa20.04■□□□□ 0.8
TRIM28-215ENST00000601150 TMX2Q9Y320 296 aa20.04■□□□□ 0.8
TRIM28-215ENST00000601150 GCLCP48506 637 aaPredicted RBP20.03■□□□□ 0.8
TRIM28-215ENST00000601150 CTDSPL2Q05D32 466 aa20.03■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L15C9J2P7 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L13C9JLJ4 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L11C9JVI0 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L18D6R9N7 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L22D6RA61 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L17D6RBQ6 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L19D6RCP7 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L20D6RJB6 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 EEF2P13639 858 aaKnown RBP20.02■□□□□ 0.8
TRIM28-215ENST00000601150 VCAM1P19320 739 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 CAP1Q01518 475 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 ATP2B2Q01814 1243 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 USP17L24Q0WX57 530 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 FBXO46Q6PJ61 603 aaPredicted RBP20.02■□□□□ 0.8
TRIM28-215ENST00000601150 RUFY2Q8WXA3 655 aa20.02■□□□□ 0.8
TRIM28-215ENST00000601150 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.02■□□□□ 0.8
TRIM28-215ENST00000601150 RAD50Q92878 1312 aa20.02■□□□□ 0.79
TRIM28-215ENST00000601150 CHMLP26374 656 aa20.01■□□□□ 0.79
TRIM28-215ENST00000601150 ANKRD13CQ8N6S4 541 aa20.01■□□□□ 0.79
TRIM28-215ENST00000601150 LPAR1Q92633 364 aa20.01■□□□□ 0.79
TRIM28-215ENST00000601150 P2RX7Q99572 595 aaKnown RBP20.01■□□□□ 0.79
TRIM28-215ENST00000601150 ARHGAP39Q9C0H5 1083 aa20.01■□□□□ 0.79
TRIM28-215ENST00000601150 PLIN4Q96Q06 1357 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 IGKV6D-41A0A0C4DH26 115 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 GNRH1P01148 92 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 TSPY3P0CV98 308 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 TSPY8P0CW00 308 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 PSMC4P43686 418 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 HERVK_113P62684 666 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 FAM110CQ1W6H9 321 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 IFFO2Q5TF58 517 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 ERICH6BQ5W0A0 696 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 CATSPERGQ6ZRH7 1159 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 SKAP1Q86WV1 359 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 NEDD1Q8NHV4 660 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 GTF3C2Q8WUA4 911 aaPredicted RBP20■□□□□ 0.79
TRIM28-215ENST00000601150 DSCC1Q9BVC3 393 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 RPAP3Q9H6T3 665 aaPredicted RBP20■□□□□ 0.79
TRIM28-215ENST00000601150 VCPKMTQ9H867 229 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 NYAP2Q9P242 653 aa20■□□□□ 0.79
TRIM28-215ENST00000601150 PARP14Q460N5 1801 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms