RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ABCB5Q2M3G0 1257 aa19.37■□□□□ 0.69
LSM4-206ENST00000600289 C16orf86Q6ZW13 317 aa19.37■□□□□ 0.69
LSM4-206ENST00000600289 EPB41L4AQ9HCS5 686 aaPredicted RBP19.37■□□□□ 0.69
LSM4-206ENST00000600289 AGTPBP1Q9UPW5 1226 aa19.37■□□□□ 0.69
LSM4-206ENST00000600289 SOX1O00570 391 aaPredicted RBP19.36■□□□□ 0.69
LSM4-206ENST00000600289 SHROOM1Q2M3G4 852 aaPredicted RBP19.36■□□□□ 0.69
LSM4-206ENST00000600289 PARK7Q99497 189 aaKnown RBP19.36■□□□□ 0.69
LSM4-206ENST00000600289 PTCH2Q9Y6C5 1203 aa19.36■□□□□ 0.69
LSM4-206ENST00000600289 TRIM6-TRIM34B2RNG4 842 aa19.35■□□□□ 0.69
LSM4-206ENST00000600289 C19orf81C9J6K1 198 aa19.35■□□□□ 0.69
LSM4-206ENST00000600289 BACE1P56817 501 aa19.35■□□□□ 0.69
LSM4-206ENST00000600289 GADL1Q6ZQY3 521 aa19.35■□□□□ 0.69
LSM4-206ENST00000600289 IFNL3Q8IZI9 196 aa19.35■□□□□ 0.69
LSM4-206ENST00000600289 NACAP1Q9BZK3 213 aa19.35■□□□□ 0.69
LSM4-206ENST00000600289 CABP5Q9NP86 173 aa19.35■□□□□ 0.69
LSM4-206ENST00000600289 PARP14Q460N5 1801 aa19.35■□□□□ 0.69
LSM4-206ENST00000600289 CYP2D7A0A087X1C5 515 aa19.34■□□□□ 0.69
LSM4-206ENST00000600289 USP17L10C9JJH3 530 aa19.34■□□□□ 0.69
LSM4-206ENST00000600289 SP3Q02447 781 aa19.34■□□□□ 0.69
LSM4-206ENST00000600289 SLC9C1Q4G0N8 1177 aa19.34■□□□□ 0.69
LSM4-206ENST00000600289 C17orf99Q6UX52 265 aa19.34■□□□□ 0.69
LSM4-206ENST00000600289 DYNLL2Q96FJ2 89 aa19.34■□□□□ 0.69
LSM4-206ENST00000600289 CCDC17Q96LX7 622 aa19.34■□□□□ 0.69
LSM4-206ENST00000600289 MYH4Q9Y623 1939 aa19.33■□□□□ 0.69
LSM4-206ENST00000600289 A0A0D9SFI3 127 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 FOXP2O15409 715 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 GUCY1A2P33402 732 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 TDO2P48775 406 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 CDK8P49336 464 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 HMGCS2P54868 508 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 PABPC4Q13310 644 aaKnown RBP eCLIP19.33■□□□□ 0.682e-14■■■■□ 19.6
LSM4-206ENST00000600289 MTMR2Q13614 643 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 MCMDC2Q4G0Z9 681 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 TTC22Q5TAA0 569 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 TMEM179Q6ZVK1 233 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 SLC44A5Q8NCS7 719 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 RILPL2Q969X0 211 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 SHISA4Q96DD7 197 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 C12orf42Q96LP6 360 aa19.33■□□□□ 0.68
LSM4-206ENST00000600289 ZMYM6O95789 1325 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 SMIM22K7EJ46 135 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 HIP1O00291 1037 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 SDSP20132 328 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 TREML2Q5T2D2 321 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 CENPQQ7L2Z9 268 aaPredicted RBP19.32■□□□□ 0.68
LSM4-206ENST00000600289 LRCH3Q96II8 777 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 FAM227BQ96M60 508 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 PNMA3Q9UL41 463 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 VCANP13611 3396 aa19.32■□□□□ 0.68
LSM4-206ENST00000600289 MYCP01106 439 aaPredicted RBP19.31■□□□□ 0.68
LSM4-206ENST00000600289 APPP05067 770 aa19.31■□□□□ 0.68
LSM4-206ENST00000600289 NMIQ13287 307 aaPredicted RBP19.31■□□□□ 0.68
LSM4-206ENST00000600289 RAB3GAP1Q15042 981 aa19.31■□□□□ 0.68
LSM4-206ENST00000600289 USP17L2Q6R6M4 530 aa19.31■□□□□ 0.68
LSM4-206ENST00000600289 NBPF11Q86T75 865 aa19.31■□□□□ 0.68
LSM4-206ENST00000600289 KIAA1683Q9H0B3 1180 aa19.31■□□□□ 0.68
LSM4-206ENST00000600289 NAPBQ9H115 298 aa19.31■□□□□ 0.68
LSM4-206ENST00000600289 TMOD4Q9NZQ9 345 aa19.31■□□□□ 0.68
LSM4-206ENST00000600289 A0A0G2JMZ2 1700 aa19.31■□□□□ 0.68
LSM4-206ENST00000600289 RLFQ13129 1914 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 ALPK3Q96L96 1907 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 BCRP11274 1271 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 AKR1B1P15121 316 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 GSPT1P15170 499 aaKnown RBP19.3■□□□□ 0.68
LSM4-206ENST00000600289 HOXA7P31268 230 aaPredicted RBP19.3■□□□□ 0.68
LSM4-206ENST00000600289 USP14P54578 494 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 SEPT2Q15019 361 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 ALX1Q15699 326 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 CCDC129Q6ZRS4 1044 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 DPF3Q92784 378 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 ZNF287Q9HBT7 754 aa19.3■□□□□ 0.68
LSM4-206ENST00000600289 CCDC171Q6TFL3 1326 aa19.29■□□□□ 0.68
LSM4-206ENST00000600289 MINDY4BA8MYZ0 360 aa19.29■□□□□ 0.68
LSM4-206ENST00000600289 CYP2C8P10632 490 aa19.29■□□□□ 0.68
LSM4-206ENST00000600289 MFAP1P55081 439 aaKnown RBP19.29■□□□□ 0.68
LSM4-206ENST00000600289 COL25A1Q9BXS0 654 aaPredicted RBP19.29■□□□□ 0.68
LSM4-206ENST00000600289 EMILIN3Q9NT22 766 aa19.29■□□□□ 0.68
LSM4-206ENST00000600289 PLIN4Q96Q06 1357 aa19.29■□□□□ 0.68
LSM4-206ENST00000600289 SPTBN5Q9NRC6 3674 aaKnown RBP19.28■□□□□ 0.68
LSM4-206ENST00000600289 MPHOSPH10O00566 681 aaKnown RBP19.28■□□□□ 0.68
LSM4-206ENST00000600289 RASA1P20936 1047 aa19.28■□□□□ 0.68
LSM4-206ENST00000600289 LACTBP83111 547 aaPredicted RBP19.28■□□□□ 0.68
LSM4-206ENST00000600289 ARHGEF6Q15052 776 aa19.28■□□□□ 0.68
LSM4-206ENST00000600289 ZNF589Q86UQ0 364 aaPredicted RBP19.28■□□□□ 0.68
LSM4-206ENST00000600289 SH3TC2Q8TF17 1288 aa19.28■□□□□ 0.68
LSM4-206ENST00000600289 ANAPC4Q9UJX5 808 aa19.28■□□□□ 0.68
LSM4-206ENST00000600289 A0A1W2PPC1 479 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 GNRH1P01148 92 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 SLC3A2P08195 630 aaKnown RBP19.27■□□□□ 0.68
LSM4-206ENST00000600289 OSBPP22059 807 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 GCLCP48506 637 aaPredicted RBP19.27■□□□□ 0.68
LSM4-206ENST00000600289 PPARAQ07869 468 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 VPS53Q5VIR6 699 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 UBE2Q1Q7Z7E8 422 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 ACER1Q8TDN7 264 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 FEZ1Q99689 392 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 SH2D4AQ9H788 454 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 DIAPH3Q9NSV4 1193 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 CPA4Q9UI42 421 aa19.27■□□□□ 0.68
LSM4-206ENST00000600289 HSPD1P10809 573 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms