RNA–Protein interactions for RNA: ENST00000598580.1

GRAMD1A-209, Transcript of GRAM domain containing 1A, human

TSL 3

Gene GRAMD1A, Length 400 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GRAMD1A-209	ENST00000598580	CATSPERG	Q6ZRH7	1159 aa		13.44	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	GDF15	Q99988	308 aa		13.44	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	NUDT12	Q9BQG2	462 aa		13.44	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	TRIM34	Q9BYJ4	488 aa		13.44	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SERPINB13	Q9UIV8	391 aa		13.44	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.44	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	MAST2	Q6P0Q8	1798 aa		13.44	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	IGHA2	P01877	340 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	COL6A1	P12109	1028 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	PDE6A	P16499	860 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	VCAM1	P19320	739 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	MAP3K12	Q12852	859 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SEPT2	Q15019	361 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	CERKL	Q49MI3	558 aa	Predicted RBP	13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	PLEKHH3	Q7Z736	793 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SIAH1	Q8IUQ4	282 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	C7orf61	Q8IZ16	206 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	ANKLE1	Q8NAG6	615 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	NBPF3	Q9H094	633 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	KIAA1683	Q9H0B3	1180 aa		13.43	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L15	C9J2P7	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L13	C9JLJ4	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L11	C9JVI0	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L18	D6R9N7	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L22	D6RA61	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L17	D6RBQ6	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L19	D6RCP7	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L20	D6RJB6	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	APBB1	O00213	710 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	PRKAB2	O43741	272 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SYN1	P17600	705 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	CAPN2	P17655	700 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	MAPK4	P31152	587 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	USP17L24	Q0WX57	530 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	RAB3GAP1	Q15042	981 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	ABCB5	Q2M3G0	1257 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SLC9C2	Q5TAH2	1124 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	LCORL	Q8N3X6	602 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SLC44A5	Q8NCS7	719 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	C11orf49	Q9H6J7	331 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	RABGAP1	Q9Y3P9	1069 aa		13.42	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	ZNF532	Q9HCE3	1301 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580		A0A0C4DFX4	3053 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	MAGEB6P1	A0A0J9YX57	407 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	MAP2K5	Q13163	448 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	TTC6	Q86TZ1	520 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	CLEC10A	Q8IUN9	316 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	TRPV1	Q8NER1	839 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	NPLOC4	Q8TAT6	608 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SDR42E1	Q8WUS8	393 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SOCS4	Q8WXH5	440 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	DYNLL2	Q96FJ2	89 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	ZBTB40	Q9NUA8	1239 aa		13.41	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	GOLIM4	O00461	696 aa		13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	ZKSCAN1	P17029	563 aa	Predicted RBP	13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	RGS2	P41220	211 aa		13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	LRRC26	Q2I0M4	334 aa		13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	LBX2	Q6XYB7	198 aa		13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	ERC1	Q8IUD2	1116 aa		13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	FEZ1	Q99689	392 aa		13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	COG6	Q9Y2V7	657 aa		13.4	□□□□□ -0.26
GRAMD1A-209	ENST00000598580	MYH1	P12882	1939 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	CYP2D7	A0A087X1C5	515 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	POLR3D	P05423	398 aa	Predicted RBP	13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	PTPRE	P23469	700 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	BMP8B	P34820	402 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	MAGEA10	P43363	369 aa	Predicted RBP	13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	DNAJC2	Q99543	621 aa	Known RBP	13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	APBA2	Q99767	749 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	BCL11A	Q9H165	835 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	ARMT1	Q9H993	441 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	MCM9	Q9NXL9	1143 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	COL6A3	P12111	3177 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	CUL9	Q8IWT3	2517 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	ZBED9	Q6R2W3	1325 aa		13.39	□□□□□ -0.27
GRAMD1A-209	ENST00000598580		A0A1W2PPC1	479 aa		13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	SLC15A5	A6NIM6	579 aa		13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	HOXC6	P09630	235 aa		13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	CYP2C19	P33261	490 aa		13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	PDE3A	Q14432	1141 aa		13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	GRB14	Q14449	540 aa		13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	CERS3	Q8IU89	383 aa		13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	DDX60L	Q5H9U9	1706 aa	Known RBP	13.38	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	DNAH12	Q6ZR08	3092 aa		13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	COBL	O75128	1261 aa		13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	AKR1B1	P15121	316 aa		13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	USP14	P54578	494 aa		13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	C20orf194	Q5TEA3	1177 aa		13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	DIEXF	Q68CQ4	756 aa	Known RBP	13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	TMED8	Q6PL24	325 aa	Predicted RBP	13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	TRMT44	Q8IYL2	757 aa	Known RBP	13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	KIF1BP	Q96EK5	621 aa		13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.37	□□□□□ -0.27
GRAMD1A-209	ENST00000598580	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms