RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 IRX3P78415 501 aaPredicted RBP15.74■□□□□ 0.11
LIG1-212ENST00000596549 USP17L2Q6R6M4 530 aa15.74■□□□□ 0.11
LIG1-212ENST00000596549 FEZ1Q99689 392 aa15.74■□□□□ 0.11
LIG1-212ENST00000596549 ATP8A2Q9NTI2 1148 aa15.74■□□□□ 0.11
LIG1-212ENST00000596549 TTC41PQ6P2S7 1318 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 VCAM1P19320 739 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 IRF5Q13568 498 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 SEPT2Q15019 361 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 CLEC10AQ8IUN9 316 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 SLAIN1Q8ND83 568 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 GPATCH3Q96I76 525 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 P2RX7Q99572 595 aaKnown RBP15.73■□□□□ 0.11
LIG1-212ENST00000596549 TMEM106CQ9BVX2 250 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 KIAA1683Q9H0B3 1180 aa15.73■□□□□ 0.11
LIG1-212ENST00000596549 A0A1W2PRG0 241 aa15.72■□□□□ 0.11
LIG1-212ENST00000596549 ELNP15502 786 aa15.72■□□□□ 0.11
LIG1-212ENST00000596549 C12orf60Q5U649 245 aa15.72■□□□□ 0.11
LIG1-212ENST00000596549 ZSCAN25Q6NSZ9 544 aa15.72■□□□□ 0.11
LIG1-212ENST00000596549 APPBP2Q92624 585 aa15.72■□□□□ 0.11
LIG1-212ENST00000596549 OSBP2Q969R2 916 aa15.72■□□□□ 0.11
LIG1-212ENST00000596549 SLC4A4Q9Y6R1 1079 aa15.72■□□□□ 0.11
LIG1-212ENST00000596549 ROBO3Q96MS0 1386 aa15.72■□□□□ 0.11
LIG1-212ENST00000596549 USP17L12C9JPN9 530 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 USP17L21D6R901 530 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 M0R2C6 588 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 ADCY3O60266 1144 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 AKR1B1P15121 316 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 C16orf86Q6ZW13 317 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 STRBPQ96SI9 672 aaKnown RBP15.71■□□□□ 0.11
LIG1-212ENST00000596549 EPB41L4AQ9HCS5 686 aaPredicted RBP15.71■□□□□ 0.11
LIG1-212ENST00000596549 CABP5Q9NP86 173 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 RBPJLQ9UBG7 517 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 SWAP70Q9UH65 585 aa15.71■□□□□ 0.11
LIG1-212ENST00000596549 MPHOSPH10O00566 681 aaKnown RBP15.7■□□□□ 0.1
LIG1-212ENST00000596549 CNMDO75829 334 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 INHAP05111 366 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 CCL5P13501 91 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 MX1P20591 662 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 KIAA1755Q5JYT7 1200 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 PRPF38BQ5VTL8 546 aaKnown RBP15.7■□□□□ 0.1
LIG1-212ENST00000596549 CTR9Q6PD62 1173 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 TMEM179Q6ZVK1 233 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 PXYLP1Q8TE99 480 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 COA7Q96BR5 231 aa15.7■□□□□ 0.1
LIG1-212ENST00000596549 ARPP21Q9UBL0 812 aaPredicted RBP15.7■□□□□ 0.1
LIG1-212ENST00000596549 LAMA4Q16363 1823 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 GSG1L2A8MUP6 293 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 RNF113AO15541 343 aaKnown RBP15.69■□□□□ 0.1
LIG1-212ENST00000596549 GPAA1O43292 621 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 CDK8P49336 464 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 USP14P54578 494 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 ERVK-9P63128 1117 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 ERVK-24P63145 666 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 HDAC1Q13547 482 aaPredicted RBP15.69■□□□□ 0.1
LIG1-212ENST00000596549 Q3C1V9 767 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 CATSPERGQ6ZRH7 1159 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 PAGR1Q9BTK6 254 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 UNC93B1Q9H1C4 597 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 PORCNQ9H237 461 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 GJD2Q9UKL4 321 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 TAOK2Q9UL54 1235 aa15.69■□□□□ 0.1
LIG1-212ENST00000596549 SPDYE16A6NNV3 312 aaPredicted RBP15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L15C9J2P7 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L13C9JLJ4 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L11C9JVI0 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L18D6R9N7 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L22D6RA61 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L17D6RBQ6 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L19D6RCP7 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L20D6RJB6 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 GLRX3O76003 335 aaKnown RBP15.68■□□□□ 0.1
LIG1-212ENST00000596549 UBXN2AP68543 259 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 USP17L24Q0WX57 530 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 SIAH1Q8IUQ4 282 aa15.68■□□□□ 0.1
LIG1-212ENST00000596549 SEC62Q99442 399 aaKnown RBP15.68■□□□□ 0.1
LIG1-212ENST00000596549 RPAP3Q9H6T3 665 aaPredicted RBP15.68■□□□□ 0.1
LIG1-212ENST00000596549 PLXNA1Q9UIW2 1896 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 ERC2O15083 957 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 GJB1P08034 283 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 ZFYP08048 801 aaPredicted RBP15.67■□□□□ 0.1
LIG1-212ENST00000596549 GJA8P48165 433 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 ICA1Q05084 483 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 SBK1Q52WX2 424 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 LBX2Q6XYB7 198 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 AMOTL1Q8IY63 956 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 GPRC5AQ8NFJ5 357 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 GTF3C2Q8WUA4 911 aaPredicted RBP15.67■□□□□ 0.1
LIG1-212ENST00000596549 TRIB2Q92519 343 aa15.67■□□□□ 0.1
LIG1-212ENST00000596549 BIN2Q9UBW5 565 aaPredicted RBP15.67■□□□□ 0.1
LIG1-212ENST00000596549 TRIM32Q13049 653 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 ANKRD45Q5TZF3 282 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 GPR142Q7Z601 462 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 UBE2Q1Q7Z7E8 422 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 GCC1Q96CN9 775 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 DDRGK1Q96HY6 314 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 FSD1Q9BTV5 496 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.66■□□□□ 0.1
LIG1-212ENST00000596549 RNF208Q9H0X6 261 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 BTBD7Q9P203 1132 aa15.66■□□□□ 0.1
LIG1-212ENST00000596549 TMX2Q9Y320 296 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms