RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 SERPINB13Q9UIV8 391 aa15.34■□□□□ 0.05
SHKBP1-209ENST00000595803 TPCN1Q9ULQ1 816 aa15.34■□□□□ 0.05
SHKBP1-209ENST00000595803 NAP1L2Q9ULW6 460 aaPredicted RBP15.34■□□□□ 0.05
SHKBP1-209ENST00000595803 MYH1P12882 1939 aa15.34■□□□□ 0.05
SHKBP1-209ENST00000595803 CUL9Q8IWT3 2517 aa15.34■□□□□ 0.05
SHKBP1-209ENST00000595803 CDK5RAP2Q96SN8 1893 aa15.33■□□□□ 0.05
SHKBP1-209ENST00000595803 TRIOBPQ9H2D6 2365 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 APOBRQ0VD83 1088 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 CCDC178Q5BJE1 867 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 FAM47AQ5JRC9 791 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 NFXL1Q6ZNB6 911 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 SLC17A8Q8NDX2 589 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 NKX2-3Q8TAU0 364 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 IGDCC4Q8TDY8 1250 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 CHMP4CQ96CF2 233 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 ZKSCAN3Q9BRR0 538 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 AGXT2Q9BYV1 514 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 FOXD4L1Q9NU39 408 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 TAOK2Q9UL54 1235 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 RBBP6Q7Z6E9 1792 aaKnown RBP15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 PAPPA2Q9BXP8 1791 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 ECM29Q5VYK3 1845 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 ROBO3Q96MS0 1386 aa15.33■□□□□ 0.04
SHKBP1-209ENST00000595803 DDTLA6NHG4 134 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 SH2B2O14492 632 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 EGFRP00533 1210 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 TSPY3P0CV98 308 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 TSPY8P0CW00 308 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 CUL4AQ13619 759 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 WTAPQ15007 396 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 ME3Q16798 604 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 SYNE3Q6ZMZ3 975 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 FAM83AQ86UY5 434 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 ZNF274Q96GC6 653 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 ZSCAN10Q96SZ4 725 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 EHD4Q9H223 541 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 SLKQ9H2G2 1235 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 GPHNQ9NQX3 736 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 ANGEL1Q9UNK9 670 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 COL6A3P12111 3177 aa15.32■□□□□ 0.04
SHKBP1-209ENST00000595803 FOCADQ5VW36 1801 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 CCDC69A6NI79 296 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 LIFRP42702 1097 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 GABPAQ06546 454 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 STK3Q13188 491 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 TNFAIP1Q13829 316 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 SH3BP5LQ7L8J4 393 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 SLC44A5Q8NCS7 719 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 LAMB1P07942 1786 aa15.31■□□□□ 0.04
SHKBP1-209ENST00000595803 KLF18A0A0U1RQI7 1052 aa15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 GPR25O00155 361 aa15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 RASA1P20936 1047 aa15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 POLR2AP24928 1970 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 EVCP57679 992 aa15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 CCDC83Q8IWF9 413 aa15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 NECAB1Q8N987 351 aa15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 NEDD1Q8NHV4 660 aa15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 DCPSQ96C86 337 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 INTS4Q96HW7 963 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 CWC22Q9HCG8 908 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-209ENST00000595803 TNKSO95271 1327 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 PFKFB2O60825 505 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 LARGE1O95461 756 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 PDIA3P30101 505 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 RASA3Q14644 834 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 NOM1Q5C9Z4 860 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 CCDC17Q96LX7 622 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 LY9Q9HBG7 655 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 TCP11L1Q9NUJ3 509 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 BRPF3Q9ULD4 1205 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 SLC12A7Q9Y666 1083 aa15.29■□□□□ 0.04
SHKBP1-209ENST00000595803 COL2A1P02458 1487 aaPredicted RBP15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 ATRNL1Q5VV63 1379 aa15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 SEC23AQ15436 765 aa15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 IFIT1BQ5T764 474 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 SGMS1Q86VZ5 419 aa15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 DGKHQ86XP1 1220 aa15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 APOBEC3FQ8IUX4 373 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 TMEM39BQ9GZU3 492 aa15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 HERC5Q9UII4 1024 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 RANBP2P49792 3224 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-209ENST00000595803 ASTN2O75129 1339 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 ZBTB43O43298 467 aa15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 SHMT1P34896 483 aa15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 CCT2P78371 535 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 CERKLQ49MI3 558 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 ANGEL2Q5VTE6 544 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 CATIPQ7Z7H3 387 aa15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 METTL16Q86W50 562 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 ENAHQ8N8S7 591 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 CDCA5Q96FF9 252 aa15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 SENP2Q9HC62 589 aa15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 GGA3Q9NZ52 723 aa15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 SMC3Q9UQE7 1217 aa15.27■□□□□ 0.04
SHKBP1-209ENST00000595803 GOLGA8BA8MQT2 603 aa15.26■□□□□ 0.03
SHKBP1-209ENST00000595803 MPHOSPH10O00566 681 aaKnown RBP15.26■□□□□ 0.03
SHKBP1-209ENST00000595803 DHX16O60231 1041 aaKnown RBP15.26■□□□□ 0.03
SHKBP1-209ENST00000595803 TBC1D12O60347 775 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms