RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 FAM43AQ8N2R8 423 aa23.25■■□□□ 1.31
LSM4-203ENST00000593829 ZCCHC17Q9NP64 241 aaKnown RBP23.25■■□□□ 1.31
LSM4-203ENST00000593829 PRDM1O75626 825 aa23.25■■□□□ 1.31
LSM4-203ENST00000593829 MTMR2Q13614 643 aa23.25■■□□□ 1.31
LSM4-203ENST00000593829 GADL1Q6ZQY3 521 aa23.25■■□□□ 1.31
LSM4-203ENST00000593829 C19orf81C9J6K1 198 aa23.24■■□□□ 1.31
LSM4-203ENST00000593829 HSPA8P11142 646 aaKnown RBP23.24■■□□□ 1.31
LSM4-203ENST00000593829 HMGCS2P54868 508 aa23.24■■□□□ 1.31
LSM4-203ENST00000593829 SH3D19Q5HYK7 790 aa23.24■■□□□ 1.31
LSM4-203ENST00000593829 CFHR5Q9BXR6 569 aa23.24■■□□□ 1.31
LSM4-203ENST00000593829 CTNNA3Q9UI47 895 aa23.24■■□□□ 1.31
LSM4-203ENST00000593829 TBC1D8O95759 1140 aa23.23■■□□□ 1.31
LSM4-203ENST00000593829 CASC1Q6TDU7 716 aa23.23■■□□□ 1.31
LSM4-203ENST00000593829 PROCA1Q8NCQ7 364 aaPredicted RBP23.23■■□□□ 1.31
LSM4-203ENST00000593829 HAND2P61296 217 aa23.23■■□□□ 1.31
LSM4-203ENST00000593829 GPAT2Q6NUI2 795 aa23.23■■□□□ 1.31
LSM4-203ENST00000593829 ZNF213O14771 459 aa23.22■■□□□ 1.31
LSM4-203ENST00000593829 CDC45O75419 566 aa23.22■■□□□ 1.31
LSM4-203ENST00000593829 FEZ1Q99689 392 aa23.22■■□□□ 1.31
LSM4-203ENST00000593829 ESYT1Q9BSJ8 1104 aa23.22■■□□□ 1.31
LSM4-203ENST00000593829 KANSL2Q9H9L4 492 aa23.22■■□□□ 1.31
LSM4-203ENST00000593829 TMOD4Q9NZQ9 345 aa23.22■■□□□ 1.31
LSM4-203ENST00000593829 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.22■■□□□ 1.31
LSM4-203ENST00000593829 PTPRFP10586 1907 aa23.22■■□□□ 1.31
LSM4-203ENST00000593829 PDHXO00330 501 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 LBX1P52954 281 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 ICA1Q05084 483 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 TAF1CQ15572 869 aaPredicted RBP23.21■■□□□ 1.31
LSM4-203ENST00000593829 ACER1Q8TDN7 264 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 FGRP09769 529 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 USP14P54578 494 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 USP17L2Q6R6M4 530 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.21■■□□□ 1.31
LSM4-203ENST00000593829 KIAA1683Q9H0B3 1180 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 ZFYVE28Q9HCC9 887 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 INCENPQ9NQS7 918 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 AGTPBP1Q9UPW5 1226 aa23.21■■□□□ 1.31
LSM4-203ENST00000593829 PTH1RQ03431 593 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 CRHR2Q13324 411 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 IMMTQ16891 758 aaKnown RBP23.2■■□□□ 1.3
LSM4-203ENST00000593829 KIAA1211Q6ZU35 1233 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 ARHGEF10LQ9HCE6 1279 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 SLC45A1Q9Y2W3 748 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 ORC4O43929 436 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 TSPY3P0CV98 308 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 TSPY8P0CW00 308 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 DGKZQ13574 1117 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 CLEC10AQ8IUN9 316 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 R3HDMLQ9H3Y0 253 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 BRPF3Q9ULD4 1205 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 TACC3Q9Y6A5 838 aa23.2■■□□□ 1.3
LSM4-203ENST00000593829 PCP11498 1178 aaKnown RBP23.19■■□□□ 1.3
LSM4-203ENST00000593829 TFAP4Q01664 338 aa23.19■■□□□ 1.3
LSM4-203ENST00000593829 AKNAD1Q5T1N1 836 aa23.19■■□□□ 1.3
LSM4-203ENST00000593829 TREML2Q5T2D2 321 aa23.19■■□□□ 1.3
LSM4-203ENST00000593829 MFSD6Q6ZSS7 791 aa23.19■■□□□ 1.3
LSM4-203ENST00000593829 SIAH1Q8IUQ4 282 aa23.19■■□□□ 1.3
LSM4-203ENST00000593829 NBPF3Q9H094 633 aa23.19■■□□□ 1.3
LSM4-203ENST00000593829 RNF41Q9H4P4 317 aaPredicted RBP23.19■■□□□ 1.3
LSM4-203ENST00000593829 SH2D4AQ9H788 454 aa23.19■■□□□ 1.3
LSM4-203ENST00000593829 EMILIN3Q9NT22 766 aa23.19■■□□□ 1.3
LSM4-203ENST00000593829 A0A1W2PRG0 241 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 PABPC4Q13310 644 aaKnown RBP eCLIP23.18■■□□□ 1.32e-14■■■■□ 19.6
LSM4-203ENST00000593829 BECN1Q14457 450 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 ZYXQ15942 572 aaKnown RBP23.18■■□□□ 1.3
LSM4-203ENST00000593829 FAM47AQ5JRC9 791 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 NEDD1Q8NHV4 660 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 STAG1Q8WVM7 1258 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 TOMM22Q9NS69 142 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 U3KPZ7 1027 aaPredicted RBP23.18■■□□□ 1.3
LSM4-203ENST00000593829 EEF2P13639 858 aaKnown RBP23.18■■□□□ 1.3
LSM4-203ENST00000593829 ATP2B2Q01814 1243 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 NOM1Q5C9Z4 860 aaKnown RBP23.18■■□□□ 1.3
LSM4-203ENST00000593829 TBC1D10CQ8IV04 446 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 C12orf42Q96LP6 360 aa23.18■■□□□ 1.3
LSM4-203ENST00000593829 PARK7Q99497 189 aaKnown RBP23.18■■□□□ 1.3
LSM4-203ENST00000593829 LOC285556D6RIA3 1793 aa23.17■■□□□ 1.3
LSM4-203ENST00000593829 PLIN4Q96Q06 1357 aa23.17■■□□□ 1.3
LSM4-203ENST00000593829 IGKV6D-41A0A0C4DH26 115 aa23.17■■□□□ 1.3
LSM4-203ENST00000593829 TSPY2A6NKD2 308 aa23.17■■□□□ 1.3
LSM4-203ENST00000593829 RANBP6O60518 1105 aaKnown RBP23.17■■□□□ 1.3
LSM4-203ENST00000593829 RRP12Q5JTH9 1297 aaKnown RBP23.17■■□□□ 1.3
LSM4-203ENST00000593829 MAP4K1Q92918 833 aa23.17■■□□□ 1.3
LSM4-203ENST00000593829 PRDM10Q9NQV6 1147 aa23.17■■□□□ 1.3
LSM4-203ENST00000593829 TMX2Q9Y320 296 aa23.17■■□□□ 1.3
LSM4-203ENST00000593829 GREB1LQ9C091 1923 aaPredicted RBP23.16■■□□□ 1.3
LSM4-203ENST00000593829 GPR25O00155 361 aa23.16■■□□□ 1.3
LSM4-203ENST00000593829 NYAP2Q9P242 653 aa23.16■■□□□ 1.3
LSM4-203ENST00000593829 TLR2O60603 784 aa23.16■■□□□ 1.3
LSM4-203ENST00000593829 LSG1Q9H089 658 aaKnown RBP23.16■■□□□ 1.3
LSM4-203ENST00000593829 RTN4Q9NQC3 1192 aaKnown RBP23.16■■□□□ 1.3
LSM4-203ENST00000593829 PNMA3Q9UL41 463 aa23.16■■□□□ 1.3
LSM4-203ENST00000593829 CEP95Q96GE4 821 aa23.15■■□□□ 1.3
LSM4-203ENST00000593829 ANO2Q9NQ90 1003 aa23.15■■□□□ 1.3
LSM4-203ENST00000593829 MTMR4Q9NYA4 1195 aa23.15■■□□□ 1.3
LSM4-203ENST00000593829 LAMA4Q16363 1823 aa23.15■■□□□ 1.3
LSM4-203ENST00000593829 CYP2C8P10632 490 aa23.14■■□□□ 1.3
LSM4-203ENST00000593829 HOXA7P31268 230 aaPredicted RBP23.14■■□□□ 1.3
LSM4-203ENST00000593829 OSBPP22059 807 aa23.14■■□□□ 1.29
LSM4-203ENST00000593829 NT5C2P49902 561 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms